Strain identifier

BacDive ID: 23121

Type strain: Yes

Species: Micromonospora sonneratiae

Strain Designation: 274745

Strain history: DSM 45704 <-- L. Li; Wuhan Univ., China; 274745.

NCBI tax ID(s): 1184706 (species)

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General

@ref: 19375

BacDive-ID: 23121

DSM-Number: 45704

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Micromonospora sonneratiae 274745 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface sterilized root of Sonneratia apetala.

NCBI tax id

  • NCBI tax id: 1184706
  • Matching level: species

strain history

@refhistory
19375<- L. Li, Wuhan Univ., China; 274745
67770DSM 45704 <-- L. Li; Wuhan Univ., China; 274745.

doi: 10.13145/bacdive23121.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora sonneratiae
  • full scientific name: Micromonospora sonneratiae Li et al. 2013

@ref: 19375

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora sonneratiae

full scientific name: Micromonospora sonneratiae Li et al. 2013

strain designation: 274745

type strain: yes

Morphology

cell morphology

  • @ref: 30748
  • gram stain: positive
  • motility: no

colony morphology

@refcolony colormedium usedincubation period
69421Clay brown (8003), fawn brown (8007)ISP 2
193753-7 days
69421Grey brown (8019), oyster white (1013)suter without tyrosine
69421Khaki grey (7008), terra brown (8028)suter with tyrosine
69421Saffron yellow (1017)ISP 3
69421Saffron yellow (1017)ISP 4
69421Saffron yellow (1017)ISP 5
69421Saffron yellow (1017)ISP 7
69421Sand yellow (1002), dahlia yellow (1033)ISP 6

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69421noAerial myceliumISP 2
69421noAerial myceliumISP 3
69421noAerial myceliumISP 4
69421noAerial myceliumISP 5
69421noAerial myceliumISP 6
69421noAerial myceliumISP 7
69421noAerial myceliumsuter with tyrosine
69421noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
30748yes
69421noMelanin
69421nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
19375https://www.dsmz.de/microorganisms/photos/DSM_45704.jpgMedium 554 28°C© Leibniz-Institut DSMZ
69421DSM_45704_image3.jpegPlates (554, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69421DSM_45704_image4.jpegPlates (554, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
19375TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
19375GPHF-MEDIUM (DSMZ Medium 553)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf
19375GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
19375N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19375positivegrowth28mesophilic
30748positivegrowth20-37
30748positiveoptimum34mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30748positivegrowth06-09alkaliphile
30748positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30748
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30748
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30748NaClpositivegrowth0-2 %
69421NaClpositivegrowth0-10 %

observation

  • @ref: 67770
  • observation: quinones: MK-10(H8), MK-10(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6942122599arabinose+growth
3074817057cellobiose+carbon source
3074828757fructose+carbon source
3074828260galactose+carbon source
3074817234glucose+carbon source
3074817716lactose+carbon source
3074829864mannitol+carbon source
3074826546rhamnose+carbon source
3074817992sucrose+carbon source
3074818222xylose+carbon source
3074817632nitrate+reduction
6942162968cellulose+growth
6942128757fructose+/-growth
6942117234glucose+growth
6942117268inositol+growth
6942137684mannose+/-growth
6942116634raffinose+growth
6942126546rhamnose+growth
6942117992sucrose+growth
6942118222xylose+growth
6837917632nitrate+reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
30748gelatinase+
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382leucine arylamidase+3.4.11.1
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69421+-----++-----------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69421+/-+/-+/-+/-++/-+/-+/-++----++/-+--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
19375surface sterilized root of Sonneratia apetalaSonneratia apetalaHainan Province, SanyaChinaCHNAsia
67770Root of Sonneratia apetala from mangrove forest in SanyaSonneratia apetalaHainan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

Safety information

risk assessment

  • @ref: 19375
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19375
  • description: Micromonospora sonneratiae strain 274745 16S ribosomal RNA gene, partial sequence
  • accession: JQ619535
  • length: 1478
  • database: ena
  • NCBI tax ID: 1184706

GC content

@refGC-contentmethod
1937571.6high performance liquid chromatography (HPLC)
3074871.6

External links

@ref: 19375

culture collection no.: DSM 45704, CCTCC AA 2012003, JCM 31037

straininfo link

  • @ref: 87357
  • straininfo: 404596

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23178729Micromonospora sonneratiae sp. nov., isolated from a root of Sonneratia apetala.Li L, Tang YL, Wei B, Xie QY, Deng Z, Hong KInt J Syst Evol Microbiol10.1099/ijs.0.043570-02012Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Fatty Acids/analysis, Genes, Bacterial, Lythraceae/*microbiology, Micromonospora/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analysisEnzymology
Phylogeny24108323Micromonospora polyrhachis sp. nov., an actinomycete isolated from edible Chinese black ant (Polyrhachis vicina Roger).Xiang W, Yu C, Liu C, Zhao J, Yang L, Xie B, Li L, Hong K, Wang XInt J Syst Evol Microbiol10.1099/ijs.0.055863-02013Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Micromonospora/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistryGenetics
Phylogeny26620702Micromonospora ovatispora sp. nov. isolated from mangrove soil.Li L, Hong KInt J Syst Evol Microbiol10.1099/ijsem.0.0008082015

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19375Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45704)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45704
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30748Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2707928776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69421Wink, J.https://cdn.dsmz.de/wink/DSM%2045704.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
87357Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404596.1StrainInfo: A central database for resolving microbial strain identifiers