Companilactobacillus ginsenosidimutans (DSM 24154, EMML 3041)

Name: Companilactobacillus ginsenosidimutans (DSM 24154, EMML 3041)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23075

Type strain

Culture col. no. DSM 24154 EMML 3041

NCBI tax ID(s) 1007676

Special Collections DSMZ

History <- H.-M. Jung, KAIST; EMML 3041

Links

Companilactobacillus ginsenosidimutans DSM 24154 is an anaerobe, mesophilic prokaryote that was isolated from Kimchi .

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 396843

DSM 24154

@ref 20215

Last LPSN update 2026-02-09 11:23:40

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Companilactobacillus

Species Companilactobacillus ginsenosidimutans

Full scientific name Companilactobacillus ginsenosidimutans Zheng et al. 2020

Synonyms (1)

"Lactobacillus ginsenosidimutans"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19326	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19326	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
19326	anaerobe
19326	microaerophile

Murein

@ref	Murein short key	Type
19326	A11.31	A4alpha L-Lys-D-Asp

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetoin degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	vitamin B1 metabolism	84.62	11 of 13
66794	vitamin B12 metabolism	82.35	28 of 34
66794	pentose phosphate pathway	81.82	9 of 11
66794	palmitate biosynthesis	81.82	18 of 22
66794	threonine metabolism	80	8 of 10
66794	vitamin K metabolism	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	glycogen biosynthesis	75	3 of 4
66794	heme metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	phenylalanine metabolism	69.23	9 of 13
66794	purine metabolism	69.15	65 of 94
66794	degradation of sugar alcohols	68.75	11 of 16
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	valine metabolism	66.67	6 of 9
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	UDP-GlcNAc biosynthesis	66.67	2 of 3
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	isoleucine metabolism	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	degradation of hexoses	61.11	11 of 18
66794	glycogen metabolism	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	non-pathway related	57.89	22 of 38
66794	propanol degradation	57.14	4 of 7
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of pentoses	57.14	16 of 28
66794	cysteine metabolism	55.56	10 of 18
66794	NAD metabolism	55.56	10 of 18
66794	flavin biosynthesis	53.33	8 of 15
66794	oxidative phosphorylation	52.75	48 of 91
66794	lysine metabolism	52.38	22 of 42
66794	alanine metabolism	51.72	15 of 29
66794	pyrimidine metabolism	51.11	23 of 45
66794	arginine metabolism	50	12 of 24
66794	butanoate fermentation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	adipate degradation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	CMP-KDO biosynthesis	50	2 of 4
66794	suberin monomers biosynthesis	50	1 of 2
66794	citric acid cycle	50	7 of 14
66794	ethanol fermentation	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	histidine metabolism	48.28	14 of 29
66794	methionine metabolism	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	tryptophan metabolism	44.74	17 of 38
66794	d-mannose degradation	44.44	4 of 9
66794	mevalonate metabolism	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	lipid metabolism	41.94	13 of 31
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	cellulose degradation	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	vitamin B6 metabolism	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	glutathione metabolism	35.71	5 of 14
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	glycine metabolism	30	3 of 10
66794	Entner Doudoroff pathway	30	3 of 10
66794	starch degradation	30	3 of 10
66794	arachidonic acid metabolism	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	metabolism of disaccharids	27.27	3 of 11
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	carnitine metabolism	25	2 of 8
66794	biotin biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	phenol degradation	25	5 of 20
66794	sulfate reduction	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	polyamine pathway	21.74	5 of 23
66794	tyrosine metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Vegetable (incl. Grains)
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
19326	Kimchi (Korean fermented food)	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ389549 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	29
Soil Samples	29
Animal Samples	64
Plant Samples	9
Total Samples	131

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
124043	ASM105047v1 assembly for Companilactobacillus ginsenosidimutans EMML 3041	complete	GCA_001050475	2630968748	1007676	98.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19326	Lactobacillus ginsenosidimutans strain EMML 3041 16S ribosomal RNA gene, partial sequence	HQ389549	1504		1007676

GC content

19326

GC-content (mol%)38.3

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bacterial metagenome profiling of hand-made herby cheese samples utilizing high-throughput sequencing to detect geographical indication and marketing potential	Rustemoglu M, Erkan ME, Cengiz G, Hajyzadeh M.	Heliyon.		2023
	Application of probiotic bacteria in ginsenoside bioconversion and enhancing its health-promoting benefits: a review.	Vasquez R, Song JH, Park YS, Paik HD, Kang DK.	Food Sci Biotechnol	10.1007/s10068-024-01734-6	2025
	Bacterial metagenome profiling of hand-made herby cheese samples utilizing high-throughput sequencing to detect geographical indication and marketing potential.	Rustemoglu M, Erkan ME, Cengiz G, Hajyzadeh M.	Heliyon	10.1016/j.heliyon.2023.e13334	2023
	Microbial Communities and Physiochemical Properties of Four Distinctive Traditionally Fermented Vegetables from North China and Their Influence on Quality and Safety.	Liang T, Xie X, Wu L, Li L, Li H, Xi Y, Feng Y, Xue L, Chen M, Chen X, Zhang J, Ding Y, Wu Q.	Foods	10.3390/foods11010021	2021
Metabolism	Exploration and Characterization of Novel Glycoside Hydrolases from the Whole Genome of Lactobacillus ginsenosidimutans and Enriched Production of Minor Ginsenoside Rg3(S) by a Recombinant Enzymatic Process.	Siddiqi MZ, Srinivasan S, Park HY, Im WT	Biomolecules	10.3390/biom10020288	2020
Phylogeny	Polyphasic characterization of two novel Lactobacillus spp. isolated from blown salami packages: Description of Lactobacillus halodurans sp. nov. and Lactobacillus salsicarnum sp. nov.	Schuster JA, Klingl A, Vogel RF, Ehrmann MA	Syst Appl Microbiol	10.1016/j.syapm.2019.126023	2019
Phylogeny	Lactobacillus ginsenosidimutans sp. nov., isolated from kimchi with the ability to transform ginsenosides.	Jung HM, Liu QM, Kim JK, Lee ST, Kim SC, Im WT	Antonie Van Leeuwenhoek	10.1007/s10482-012-9868-y	2012
Phylogeny	Lactobacillus insicii sp. nov., isolated from fermented raw meat.	Ehrmann MA, Krockel L, Lick S, Radmann P, Bantleon A, Vogel RF	Int J Syst Evol Microbiol	10.1099/ijsem.0.000705	2015

References

#19326	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24154
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Companilactobacillus ginsenosidimutans (DSM 24154, EMML 3041)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001050475

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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