Name: Leptospira idonii Eri-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23076

Type strain:

Species: Leptospira idonii

Strain Designation: Eri-1

Culture col. no.: DSM 26084, JCM 18486

Strain history: M. Saito strain Eri-1.

NCBI tax ID(s): 1193500 (species)

SI-ID 401461

DSM 26084

Section

Leptospira idonii Eri-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from environmental water beside a swimming pool.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Leptospirales*
	Family	*Leptospiraceae*
	Genus	*Leptospira*
	Species	**Leptospira idonii**
	Full Scientific Name (LPSN)	Leptospira idonii Saito et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30908]	Gram stain	negative

[Ref.: #30908]	Cell length	10.6 µm

[Ref.: #30908]	Cell width	0.2 µm

[Ref.: #30908]	Cell shape	rod-shaped

[Ref.: #30908]	Motility	yes

[Ref.: #19378]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19378]

Culture medium

LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)

[Ref.: #19378]

Culture medium growth

[Ref.: #19378]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19378]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19378]			growth	37 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #19378]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30908]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19378]	Sample type/isolated from	environmental water beside a swimming pool
[Ref.: #19378]	Geographic location (country and/or sea, region)	Fukuoka, Hakozaki campus of Kyushu University
[Ref.: #19378]	Country	Japan
[Ref.: #19378]	Country ISO 3 Code	JPN
[Ref.: #19378]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Environmental water sample on the campus of Kyushu University
[Ref.: #67770]	Geographic location (country and/or sea, region)	Fukuoka
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB721966 (>99% sequence identity) for Leptospira idonii from Microbeatlas

Aquatic Samples	2841
Soil Samples	218
Animal Samples	126
Plant Samples	88
Total Samples	3273

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19378]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19378]	Leptospira idonii gene for 16S rRNA, partial sequence	AB721966	1443	ENA	1193500 tax ID

[Ref.: #19378]	GC-content	42.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30908]	GC-content	42.5 mol%

Availability in culture collections External links

[Ref.: #19378]

Culture collection no.

DSM 26084, JCM 18486

[Ref.: #87314]

SI-ID 401461

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leptospira idonii sp. nov., isolated from environmental water.	Saito M, Villanueva SYAM, Kawamura Y, Iida KI, Tomida J, Kanemaru T, Kohno E, Miyahara S, Umeda A, Amako K, Gloriani NG, Yoshida SI	Int J Syst Evol Microbiol	10.1099/ijs.0.047233-0	2012	*

References

#19378

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26084

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30908

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27238 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87314

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401461.1 )

#27238

IJSEM 2457 2013 ( DOI 10.1099/ijs.0.047233-0 , PubMed 23203626 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Leptospira idonii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF