Strain identifier
BacDive ID: 23075
Type strain: 
Species: Companilactobacillus ginsenosidimutans
Strain history: <- H.-M. Jung, KAIST; EMML 3041
NCBI tax ID(s): 1007676 (species)
version 8.1 (current version)
General
@ref: 19326
BacDive-ID: 23075
DSM-Number: 24154
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Companilactobacillus ginsenosidimutans DSM 24154 is an anaerobe, mesophilic bacterium that was isolated from Kimchi .
NCBI tax id
- NCBI tax id: 1007676
- Matching level: species
strain history
- @ref: 19326
- history: <- H.-M. Jung, KAIST; EMML 3041
doi: 10.13145/bacdive23075.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Companilactobacillus
- species: Companilactobacillus ginsenosidimutans
- full scientific name: Companilactobacillus ginsenosidimutans Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus ginsenosidimutans
@ref: 19326
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Companilactobacillus
species: Companilactobacillus ginsenosidimutans
full scientific name: Companilactobacillus ginsenosidimutans Zheng et al. 2020
type strain: yes
Culture and growth conditions
culture medium
- @ref: 19326
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 19326
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 19326 | anaerobe |
| 19326 | microaerophile |
murein
- @ref: 19326
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
Isolation, sampling and environmental information
isolation
- @ref: 19326
- sample type: Kimchi (Korean fermented food)
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Vegetable (incl. Grains) |
| #Engineered | #Food production | #Fermented |
taxonmaps
- @ref: 69479
- File name: preview.99_4361.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1756;97_2100;98_3278;99_4361&stattab=map
- Last taxonomy: Companilactobacillus
- 16S sequence: HQ389549
- Sequence Identity:
- Total samples: 131
- soil counts: 29
- aquatic counts: 29
- animal counts: 64
- plant counts: 9
Sequence information
16S sequences
- @ref: 19326
- description: Lactobacillus ginsenosidimutans strain EMML 3041 16S ribosomal RNA gene, partial sequence
- accession: HQ389549
- length: 1504
- database: ena
- NCBI tax ID: 1007676
GC content
- @ref: 19326
- GC-content: 38.3
External links
@ref: 19326
culture collection no.: DSM 24154, EMML 3041
straininfo link
- @ref: 87313
- straininfo: 396843
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23271644 | Lactobacillus ginsenosidimutans sp. nov., isolated from kimchi with the ability to transform ginsenosides. | Jung HM, Liu QM, Kim JK, Lee ST, Kim SC, Im WT | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9868-y | 2012 | Bacterial Typing Techniques, Biotransformation, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Food Microbiology, Ginsenosides/*metabolism, Lactobacillus/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, beta-Glucosidase/metabolism | Metabolism |
| Phylogeny | 26486967 | Lactobacillus insicii sp. nov., isolated from fermented raw meat. | Ehrmann MA, Krockel L, Lick S, Radmann P, Bantleon A, Vogel RF | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000705 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dipeptides/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Lactobacillus/*cytology/genetics/isolation & purification, Meat Products/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Swine | Biotechnology |
| Phylogeny | 31668878 | Polyphasic characterization of two novel Lactobacillus spp. isolated from blown salami packages: Description of Lactobacillus halodurans sp. nov. and Lactobacillus salsicarnum sp. nov. | Schuster JA, Klingl A, Vogel RF, Ehrmann MA | Syst Appl Microbiol | 10.1016/j.syapm.2019.126023 | 2019 | Animals, Base Composition, Fatty Acids/analysis, Fermented Foods/*microbiology, *Food Microbiology, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Lactobacillus/chemistry/*classification/genetics/ultrastructure, Meat Products/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Swine | Biotechnology |
| Metabolism | 32059542 | Exploration and Characterization of Novel Glycoside Hydrolases from the Whole Genome of Lactobacillus ginsenosidimutans and Enriched Production of Minor Ginsenoside Rg3(S) by a Recombinant Enzymatic Process. | Siddiqi MZ, Srinivasan S, Park HY, Im WT | Biomolecules | 10.3390/biom10020288 | 2020 | Bacterial Proteins/*metabolism, Biotransformation, Chromatography, High Pressure Liquid, Chromatography, Thin Layer, Fermentation, Genome, Bacterial, Ginsenosides/biosynthesis/*chemistry, Glycoside Hydrolases/*metabolism, Hydrogen-Ion Concentration, Hydrolysis, Ions, Lactobacillus/enzymology/*genetics, Multilocus Sequence Typing, Panax/chemistry, Phylogeny, Recombinant Proteins/metabolism, Substrate Specificity, Temperature | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 19326 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24154) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24154 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87313 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID396843.1 | StrainInfo: A central database for resolving microbial strain identifiers |