Strain identifier

BacDive ID: 23075

Type strain: Yes

Species: Companilactobacillus ginsenosidimutans

Strain history: <- H.-M. Jung, KAIST; EMML 3041

NCBI tax ID(s): 1007676 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 19326

BacDive-ID: 23075

DSM-Number: 24154

keywords: mesophilic, anaerobe, Bacteria, 16S sequence

description: Companilactobacillus ginsenosidimutans DSM 24154 is an anaerobe, mesophilic bacterium that was isolated from Kimchi .

NCBI tax id

  • NCBI tax id: 1007676
  • Matching level: species

strain history: <- H.-M. Jung, KAIST; EMML 3041

doi: 10.13145/bacdive23075.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Companilactobacillus
  • species: Companilactobacillus ginsenosidimutans
  • full scientific name: Companilactobacillus ginsenosidimutans Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus ginsenosidimutans

@ref: 19326

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Companilactobacillus

species: Companilactobacillus ginsenosidimutans

full scientific name: Companilactobacillus ginsenosidimutans Zheng et al. 2020

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 19326
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

  • @ref: 19326
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
19326anaerobe
19326microaerophile

murein

  • @ref: 19326
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

Isolation, sampling and environmental information

isolation

  • @ref: 19326
  • sample type: Kimchi (Korean fermented food)
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Vegetable (incl. Grains)
#Engineered#Food production#Fermented

Sequence information

16S sequences

  • @ref: 19326
  • description: Lactobacillus ginsenosidimutans strain EMML 3041 16S ribosomal RNA gene, partial sequence
  • accession: HQ389549
  • length: 1504
  • database: ena
  • NCBI tax ID: 1007676

GC content

  • @ref: 19326
  • GC-content: 38.3

External links

@ref: 19326

culture collection no.: DSM 24154, EMML 3041

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23271644Lactobacillus ginsenosidimutans sp. nov., isolated from kimchi with the ability to transform ginsenosides.Jung HM, Liu QM, Kim JK, Lee ST, Kim SC, Im WTAntonie Van Leeuwenhoek10.1007/s10482-012-9868-y2012Bacterial Typing Techniques, Biotransformation, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Food Microbiology, Ginsenosides/*metabolism, Lactobacillus/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, beta-Glucosidase/metabolismMetabolism
Phylogeny31668878Polyphasic characterization of two novel Lactobacillus spp. isolated from blown salami packages: Description of Lactobacillus halodurans sp. nov. and Lactobacillus salsicarnum sp. nov.Schuster JA, Klingl A, Vogel RF, Ehrmann MASyst Appl Microbiol10.1016/j.syapm.2019.1260232019Animals, Base Composition, Fatty Acids/analysis, Fermented Foods/*microbiology, *Food Microbiology, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Lactobacillus/chemistry/*classification/genetics/ultrastructure, Meat Products/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, SwineBiotechnology
Metabolism32059542Exploration and Characterization of Novel Glycoside Hydrolases from the Whole Genome of Lactobacillus ginsenosidimutans and Enriched Production of Minor Ginsenoside Rg3(S) by a Recombinant Enzymatic Process.Siddiqi MZ, Srinivasan S, Park HY, Im WTBiomolecules10.3390/biom100202882020Bacterial Proteins/*metabolism, Biotransformation, Chromatography, High Pressure Liquid, Chromatography, Thin Layer, Fermentation, Genome, Bacterial, Ginsenosides/biosynthesis/*chemistry, Glycoside Hydrolases/*metabolism, Hydrogen-Ion Concentration, Hydrolysis, Ions, Lactobacillus/enzymology/*genetics, Multilocus Sequence Typing, Panax/chemistry, Phylogeny, Recombinant Proteins/metabolism, Substrate Specificity, TemperatureGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
19326Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24154)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24154
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880