Name: Acetobacter fabarum 985
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23

Type strain:

Species: Acetobacter fabarum

Strain Designation: 985, R-36330

Culture col. no.: DSM 19596, LMG 24244

Strain history: <- L. De Vuyst, Vrije Univ. Brussels, Belgium; 985 <- N. Camu

NCBI tax ID(s): 1307906 (strain), 483199 (species)

SI-ID 309084

LMG 24244, DSM 19596

Special Collections

Section

Acetobacter fabarum 985 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from cocoa bean heap fermentation.

colony-forming
Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Acetobacter*
	Species	**Acetobacter fabarum**
	Full Scientific Name (LPSN)	Acetobacter fabarum Cleenwerck et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #23238]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.833

[Ref.: #23238]	Cell length	1.2-3.0 µm

[Ref.: #23238]	Cell width	0.8 µm

[Ref.: #23238]	Cell shape	rod-shaped

[Ref.: #23238]	Motility	yes

[Ref.: #23238]	Colony size	0.8 mm
[Ref.: #23238]	Colony color	beige
[Ref.: #23238]	Colony shape	circular
[Ref.: #23238]	Incubation period	3 days
[Ref.: #23238]	Cultivation medium used	Z1 agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8200]

Culture medium

MANNITOL-YEAST EXTRACT-PEPTONE (DSMZ Medium 1087)

[Ref.: #8200]

Culture medium growth

[Ref.: #8200]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8200]

Culture medium composition

expand / minimize

[Ref.: #23238]

Culture medium

Z1 agar

[Ref.: #23238]

Culture medium growth

[Ref.: #23238]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8200]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.852
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23238]	D-xylose ChEBI	+	growth
[Ref.: #23238]	ethanol ChEBI	+	oxidation
[Ref.: #23238]	maltose ChEBI	-	growth
[Ref.: #23238]	methanol ChEBI	+	growth

	Metabolite	Production
[Ref.: #23238]	2-dehydro-D-gluconate ChEBI	no
[Ref.: #23238]	5-dehydro-D-gluconate ChEBI	no
[Ref.: #23238]	D-gluconate ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23238]		catalase	+	1.11.1.6
[Ref.: #23238]		cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8200]	Sample type/isolated from	cocoa bean heap fermentation
[Ref.: #8200]	Country	Ghana
[Ref.: #8200]	Country ISO 3 Code	GHA
[Ref.: #8200]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	-
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM905849 (>99% sequence identity) for Acetobacter from Microbeatlas

Aquatic Samples	428
Soil Samples	352
Animal Samples	2157
Plant Samples	309
Total Samples	3246

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8200]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8200]	Acetobacter fabarum partial 16S rRNA gene, type strain R-36330T	AM905849	1442	GenBank ENA	483199 tax ID
[Ref.: #20218]	Acetobacter fabarum gene for 16S ribosomal RNA, partial sequence, strain: LMG 24244	AB665084	1412	GenBank ENA	483199 tax ID	*
[Ref.: #124043]	Acetobacter fabarum DNA, 16S-23S ribosomal RNA intergenic spacer, partial sequence, strain: LMG 24244.	AB936622	629	GenBank ENA	483199 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acetobacter fabarum LMG 24244	GCA_011516925	contig	GenBank ENA	483199 tax ID	*
[Ref.: #66792]	Acetobacter fabarum strain LMG 24244	483199.11	wgs	PATRIC	483199 tax ID	*

[Ref.: #8200]	GC-content	57.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23238]	GC-content	57.60 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acetobacter fabarum strain LMG 24244 PATRIC: 483199.7
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acetobacter fabarum strain LMG 24244 PATRIC: 483199.11
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.833	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	86.59	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.852	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	72.944	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.039	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	58.571	no

Availability in culture collections External links

[Ref.: #8200]

Culture collection no.

DSM 19596, LMG 24244

[Ref.: #69707]

SI-ID 309084

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Oxidation of metabolites highlights the microbial interactions and role of Acetobacter pasteurianus during cocoa bean fermentation.	Moens F, Lefeber T, De Vuyst L	Appl Environ Microbiol	10.1128/AEM.03344-13	2014	*
Phylogeny	Acetobacter fabarum sp. nov., an acetic acid bacterium from a Ghanaian cocoa bean heap fermentation.	Cleenwerck I, Gonzalez A, Camu N, Engelbeen K, De Vos P, De Vuyst L	Int J Syst Evol Microbiol	10.1099/ijs.0.65778-0	2008	*

References

#8200

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19596

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23238

Ilse Cleenwerck, Ángel Gonzalez, Nicholas Camu, Katrien Engelbeen, Paul De Vos, Luc De Vuyst: Acetobacter fabarum sp. nov., an acetic acid bacterium from a Ghanaian cocoa bean heap fermentation. IJSEM 58: 2180 - 2185 2008 ( DOI 10.1099/ijs.0.65778-0 , PubMed 18768626 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69707

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309084.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Acetobacter fabarum strain LMG 24244

Acetobacter fabarum strain LMG 24244

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