Carnobacterium divergens 66 | Type strain | DSM 20623, ATCC 35677, NCDO 2763, WDCM 00075, CCUG 30094, CCM 4117

Strain identifier

BacDive ID: 2253

Type strain:

Species: Carnobacterium divergens

Strain Designation: 66

Culture col. no.: DSM 20623, ATCC 35677, NCDO 2763, WDCM 00075, CCUG 30094, CCM 4117

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Carnobacterium divergens 66 is a microaerophile, mesophilic bacterium that was isolated from vacuum-packaged minced beef.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	10-09-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Lactobacillales
	Family	Carnobacteriaceae
	Genus	Carnobacterium
	Species	Carnobacterium divergens
	Full Scientific Name (PNU)	Carnobacterium divergens (Holzapfel and Gerber 1984) Collins et al. 1987

Synonym

Lactobacillus divergens

Information on morphological and physiological propertiesMorphology and physiology

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8971]	4657	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

[Ref.: #8971]	Murein short key	A31
[Ref.: #8971]	Murein types	A1gamma m-Dpm-direct

[Ref.: #49897]

Oxygen tolerance

microaerophile

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8971]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92), 30°C, microaerobic

[Ref.: #8971]

Culture medium growth

[Ref.: #8971]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41662]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41662]

Culture medium growth

[Ref.: #41662]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8971]	growth	30 ̊C
[Ref.: #41662]	growth	30 ̊C
[Ref.: #49897]	growth	30 ̊C

[Ref.: #8971]	Temperature range	mesophilic
[Ref.: #41662]	Temperature range	mesophilic
[Ref.: #49897]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8971]

Sample type/isolated from

vacuum-packaged minced beef

[Ref.: #49897]

Sample type/isolated from

Vacuum-packaged minced beef

[Ref.: #49897]

Country

South Africa

[Ref.: #49897]

Country ISO 3 Code

ZAF

[Ref.: #49897]

Continent

Africa

Isolation sources categories

#Engineered	#Food production	#Bottled, canned, packed food
#Engineered	#Food production	#Meat

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #8971]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #8971]

GC-content

35.5 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #8971]	whole genome shotgun sequence, Whole Genome Shotgun (WGS) Sequence INSDC	Carnobacterium divergens DSM 20623, whole genome shotgun sequencing project	JQBS00000000 ENA		35	1449336 tax ID
[Ref.: #8971]	whole genome shotgun sequence, Whole Genome Shotgun (WGS) Sequence INSDC	Carnobacterium divergens DSM 20623 strain 66, whole genome shotgun sequencing project	JQLO00000000 ENA		1	1449336 tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Carnobacterium divergens strain ATCC 35677 16S ribosomal RNA gene, partial sequence	GU460377 ENA	16S	809	2748 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Carnobacterium divergens strain ATCC 35677 60 kDa chaperonin (cpn60) gene, partial cds	GU911352 ENA		552	2748 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Carnobacterium divergens strain DSM 20623 RpoB gene, partial cds	AF515644 ENA		321	2748 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Carnobacterium divergens partial recA gene for recombinase A, strain DSM 20623T	AJ621691 ENA		600	2748 tax ID	*
[Ref.: #20218]	INSDC Sequence	Carnobacterium divergens strain DSM 20623 16S ribosomal RNA gene, partial sequence	M58816 ENA	16S	1502	2748 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Carnobacterium divergens partial cpn60 gene for heat shock protein, type strain DSMZ 20623T	FM177905 ENA		503	2748 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Carnobacterium divergens tuf gene for elongation factor Tu, partial cds, strain: JCM 5816	AB472800 ENA		774	2748 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Carnobacterium divergens partial atpA gene for ATP synthase alpha chain, strain LMG 9199T	AJ843296 ENA		1102	2748 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Carnobacterium divergens partial pheS gene for phenylalanyl-tRNA synthase alpha subunit, strain LMG 9199	HE590700 ENA		459	2748 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Carnobacterium divergens partial rpoA gene for RNA polymerase alpha subunit, strain LMG 9199	HE590701 ENA		574	2748 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Carnobacterium divergens partial atpA gene for alpha subunit of ATP synthase, strain LMG 9199	HE590702 ENA		1101	2748 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Carnobacterium divergens gene for 16S rRNA, partial sequence, strain: NBRC 15683	AB680940 ENA	16S	1481	2748 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; small 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF374292 ENA	16S	446	2748 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; medium 16S-23S intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF374293 ENA	16S	554	2748 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; large 16S-23S intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF374294 ENA	16S	668	2748 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Carnobacterium divergens partial 16S RNA	X54270 ENA	16S	1492	2748 tax ID	*

Availability in culture collectionsStrain availability

[Ref.: #8971]

Culture collection no.

DSM 20623, ATCC 35677, NCDO 2763, WDCM 00075, CCUG 30094, CCM 4117

[Ref.: #8971]

Strain history

<- W.H. Holzapfel, 66

[Ref.: #20218]

Associated Passport(s) in StrainInfo

6789, 6786, 120951, 866272

References

#8971

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20623

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41662 ; Curators of the CIP;
#49897 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30094
* These References are textmined

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