Carnobacterium divergens 66 | Type strain | DSM 20623, ATCC 35677, NCDO 2763, WDCM 00075, CCUG 30094, CCM 4117

Strain identifier

BacDive ID: 2253

Type strain:

Species: Carnobacterium divergens

Strain Designation: 66

Culture col. no.: DSM 20623, ATCC 35677, NCDO 2763, WDCM 00075, CCUG 30094, CCM 4117

Strain history: <- W.H. Holzapfel, 66

Section

Name and taxonomic classification
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Carnobacterium divergens 66 is a microaerophile, mesophilic bacterium that was isolated from vacuum-packaged minced beef.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Lactobacillales
	Family	Carnobacteriaceae
	Genus	Carnobacterium
	Species	Carnobacterium divergens
	Full Scientific Name (PNU)	Carnobacterium divergens (Holzapfel and Gerber 1984) Collins et al. 1987

Synonym

Lactobacillus divergens

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8971]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92), microaerobic

[Ref.: #8971]

Culture medium growth

[Ref.: #8971]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41662]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41662]

Culture medium growth

[Ref.: #41662]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8971]	growth	30 ̊C
[Ref.: #41662]	growth	30 ̊C
[Ref.: #49897]	growth	30 ̊C

[Ref.: #8971]	Temperature range	mesophilic
[Ref.: #41662]	Temperature range	mesophilic
[Ref.: #49897]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #49897]

Oxygen tolerance

microaerophile

[Ref.: #8971]	Murein short key	A31
[Ref.: #8971]	Murein types	A1gamma m-Dpm-direct

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8971]	6197	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8971]	Sample type/isolated from	vacuum-packaged minced beef

[Ref.: #49897]	Sample type/isolated from	Vacuum-packaged minced beef
[Ref.: #49897]	Country	South Africa
[Ref.: #49897]	Country ISO 3 Code	ZAF
[Ref.: #49897]	Continent	Africa

Isolation sources categories

#Engineered	#Food production	#Bottled, canned, packed food
#Engineered	#Food production	#Meat

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #8971]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Carnobacterium divergens strain ATCC 35677 16S ribosomal RNA gene, partial sequence	GU460377	809	ENA	2748 tax ID	*
[Ref.: #20218]	Carnobacterium divergens strain DSM 20623 16S ribosomal RNA gene, partial sequence	M58816	1502	ENA	2748 tax ID	*
[Ref.: #20218]	Carnobacterium divergens gene for 16S rRNA, partial sequence, strain: NBRC 15683	AB680940	1481	ENA	2748 tax ID	*
[Ref.: #20218]	Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; small 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF374292	446	ENA	2748 tax ID	*
[Ref.: #20218]	Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; medium 16S-23S intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF374293	554	ENA	2748 tax ID	*
[Ref.: #20218]	Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; large 16S-23S intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF374294	668	ENA	2748 tax ID	*
[Ref.: #20218]	Carnobacterium divergens partial 16S RNA	X54270	1492	ENA	2748 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Carnobacterium divergens DSM 20623 66	GCA_000744255	contig	GenBank	1449336 tax ID
[Ref.: #66792]	Carnobacterium divergens TMW 2.1579	GCA_001703555	complete	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens MFPA43A1505	GCA_900258435	chromosome	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens NCTC13772	GCA_900446755	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens DSM 20623	GCA_001437085	scaffold	GenBank	1449336 tax ID
[Ref.: #66792]	Carnobacterium divergens TMW 2.1577	GCA_009295565	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C13	GCA_004564395	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens A10	GCA_004564835	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C16	GCA_004564415	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C6	GCA_004564475	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens B8	GCA_004564535	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens B7	GCA_004564555	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens CDIV41	GCA_900088465	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens A4	GCA_004564915	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens A12	GCA_004564775	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens A11	GCA_004564785	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens A2	GCA_004564935	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens A8	GCA_004564865	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C10	GCA_004565065	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C7	GCA_004564425	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C5	GCA_004564525	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens B2	GCA_004564655	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens B1	GCA_004564685	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens B6	GCA_004565125	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C14	GCA_004565005	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens A13	GCA_004564765	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens A9	GCA_004565205	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C3	GCA_004564515	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C15	GCA_004564995	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C11	GCA_004564435	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens B5	GCA_004564605	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C4	GCA_004565095	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C9	GCA_004565085	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C8	GCA_004564405	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C1	GCA_004564565	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens B4	GCA_004564615	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens B3	GCA_004564645	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C17	GCA_004564965	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C18	GCA_004564985	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C12	GCA_004565035	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens C2	GCA_004565115	contig	GenBank	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens DSM 20623	1449336.4	wgs	PATRIC	1449336 tax ID
[Ref.: #66792]	Carnobacterium divergens DSM 20623 strain 66	1449336.3	wgs	PATRIC	1449336 tax ID
[Ref.: #66792]	Carnobacterium divergens strain A10	2748.55	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain A11	2748.54	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain A12	2748.53	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain A13	2748.52	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain A2	2748.59	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain A4	2748.56	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain A8	2748.57	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain A9	2748.68	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain B1	2748.51	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain B2	2748.50	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain B3	2748.49	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain B4	2748.48	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain B5	2748.47	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain B6	2748.69	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain B7	2748.45	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain B8	2748.44	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C1	2748.46	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C10	2748.64	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C11	2748.40	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C12	2748.63	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C13	2748.36	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C14	2748.62	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C15	2748.60	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C16	2748.38	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C17	2748.58	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C18	2748.61	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C2	2748.67	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C3	2748.42	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C4	2748.66	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C5	2748.43	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C6	2748.41	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C7	2748.39	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C8	2748.37	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain C9	2748.65	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain CDIV41	2748.5	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain NCTC13772	2748.19	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain TMW 2.1577	2748.70	wgs	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens strain TMW 2.1579	2748.21	complete	PATRIC	2748 tax ID
[Ref.: #66792]	Carnobacterium divergens 66	2574180433	permanent	JGI IMG/M	2748 tax ID

[Ref.: #8971]

GC-content

35.5 mol%

Availability in culture collectionsExternal links

[Ref.: #8971]

Culture collection no.

DSM 20623, ATCC 35677, NCDO 2763, WDCM 00075, CCUG 30094, CCM 4117

[Ref.: #20218]

Associated Passport(s) in StrainInfo

6789, 6786, 120951, 866272

References

#8971

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20623

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41662 ; Curators of the CIP;
#49897 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30094

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

Change proposal

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