Strain identifier
BacDive ID: 2253
Type strain:
Species: Carnobacterium divergens
Strain Designation: 66
Culture col. no.: DSM 20623, ATCC 35677, NCDO 2763, WDCM 00075, CCUG 30094, CCM 4117
General
@ref: 8971
BacDive-ID: 2253
DSM-Number: 20623
keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic
description: Carnobacterium divergens 66 is a microaerophile, mesophilic bacterium that was isolated from vacuum-packaged minced beef.
strain history: <- W.H. Holzapfel, 66
doi: 10.13145/bacdive2253.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/firmicutes
- domain: Bacteria
- phylum: Firmicutes
- class: Bacilli
- order: Lactobacillales
- family: Carnobacteriaceae
- genus: Carnobacterium
- species: Carnobacterium divergens
- full scientific name: Carnobacterium divergens (Holzapfel and Gerber 1984) Collins et al. 1987
synonyms
- @ref: 20215
- synonym: Lactobacillus divergens
@ref: 8971
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Carnobacteriaceae
genus: Carnobacterium
species: Carnobacterium divergens
full scientific name: Carnobacterium divergens (Holzapfel and Gerber 1984) Collins et al. 1987
strain designation: 66
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8971 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92), microaerobic | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf | |
41662 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8971 | positive | growth | 30 | mesophilic |
41662 | positive | growth | 30 | mesophilic |
49897 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 49897
- oxygen tolerance: microaerophile
murein
- @ref: 8971
- murein short key: A31
- type: A1gamma m-Dpm-direct
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8971 | - | - | - | - | - | + | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | + | + | + | + | + | + | - | - | + | + | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
8971 | vacuum-packaged minced beef | |||
49897 | Vacuum-packaged minced beef | South Africa | ZAF | Africa |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Bottled, canned, packed food |
#Engineered | #Food production | #Meat |
Safety information
risk assessment
- @ref: 8971
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Carnobacterium divergens strain ATCC 35677 16S ribosomal RNA gene, partial sequence | GU460377 | 809 | ena | 2748 |
20218 | Carnobacterium divergens strain DSM 20623 16S ribosomal RNA gene, partial sequence | M58816 | 1502 | ena | 2748 |
20218 | Carnobacterium divergens gene for 16S rRNA, partial sequence, strain: NBRC 15683 | AB680940 | 1481 | ena | 2748 |
20218 | Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; small 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF374292 | 446 | ena | 2748 |
20218 | Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; medium 16S-23S intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF374293 | 554 | ena | 2748 |
20218 | Carnobacterium divergens 16S ribosomal RNA gene, partial sequence; large 16S-23S intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF374294 | 668 | ena | 2748 |
20218 | Carnobacterium divergens partial 16S RNA | X54270 | 1492 | ena | 2748 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Carnobacterium divergens DSM 20623 66 | GCA_000744255 | contig | ncbi | 1449336 |
66792 | Carnobacterium divergens TMW 2.1579 | GCA_001703555 | complete | ncbi | 2748 |
66792 | Carnobacterium divergens MFPA43A1505 | GCA_900258435 | chromosome | ncbi | 2748 |
66792 | Carnobacterium divergens NCTC13772 | GCA_900446755 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens DSM 20623 | GCA_001437085 | scaffold | ncbi | 1449336 |
66792 | Carnobacterium divergens TMW 2.1577 | GCA_009295565 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C13 | GCA_004564395 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens A10 | GCA_004564835 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C16 | GCA_004564415 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C6 | GCA_004564475 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens B8 | GCA_004564535 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens B7 | GCA_004564555 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens CDIV41 | GCA_900088465 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens A4 | GCA_004564915 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens A12 | GCA_004564775 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens A11 | GCA_004564785 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens A2 | GCA_004564935 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens A8 | GCA_004564865 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C10 | GCA_004565065 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C7 | GCA_004564425 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C5 | GCA_004564525 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens B2 | GCA_004564655 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens B1 | GCA_004564685 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens B6 | GCA_004565125 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C14 | GCA_004565005 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens A13 | GCA_004564765 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens A9 | GCA_004565205 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C3 | GCA_004564515 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C15 | GCA_004564995 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C11 | GCA_004564435 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens B5 | GCA_004564605 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C4 | GCA_004565095 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C9 | GCA_004565085 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C8 | GCA_004564405 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C1 | GCA_004564565 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens B4 | GCA_004564615 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens B3 | GCA_004564645 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C17 | GCA_004564965 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C18 | GCA_004564985 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C12 | GCA_004565035 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens C2 | GCA_004565115 | contig | ncbi | 2748 |
66792 | Carnobacterium divergens DSM 20623 | 1449336.4 | wgs | patric | 1449336 |
66792 | Carnobacterium divergens DSM 20623 strain 66 | 1449336.3 | wgs | patric | 1449336 |
66792 | Carnobacterium divergens strain A10 | 2748.55 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain A11 | 2748.54 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain A12 | 2748.53 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain A13 | 2748.52 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain A2 | 2748.59 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain A4 | 2748.56 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain A8 | 2748.57 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain A9 | 2748.68 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain B1 | 2748.51 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain B2 | 2748.50 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain B3 | 2748.49 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain B4 | 2748.48 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain B5 | 2748.47 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain B6 | 2748.69 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain B7 | 2748.45 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain B8 | 2748.44 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C1 | 2748.46 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C10 | 2748.64 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C11 | 2748.40 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C12 | 2748.63 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C13 | 2748.36 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C14 | 2748.62 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C15 | 2748.60 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C16 | 2748.38 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C17 | 2748.58 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C18 | 2748.61 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C2 | 2748.67 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C3 | 2748.42 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C4 | 2748.66 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C5 | 2748.43 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C6 | 2748.41 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C7 | 2748.39 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C8 | 2748.37 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain C9 | 2748.65 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain CDIV41 | 2748.5 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain NCTC13772 | 2748.19 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain TMW 2.1577 | 2748.70 | wgs | patric | 2748 |
66792 | Carnobacterium divergens strain TMW 2.1579 | 2748.21 | complete | patric | 2748 |
66792 | Carnobacterium divergens 66 | 2574180433 | permanent | img | 2748 |
GC content
- @ref: 8971
- GC-content: 35.5
External links
@ref: 8971
culture collection no.: DSM 20623, ATCC 35677, NCDO 2763, WDCM 00075, CCUG 30094, CCM 4117
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/6789 |
20218 | http://www.straininfo.net/strains/6786 |
20218 | http://www.straininfo.net/strains/120951 |
20218 | http://www.straininfo.net/strains/866272 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8971 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20623) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20623 | |||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41662 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/12559 | ||||
49897 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 30094) | https://www.ccug.se/strain?id=30094 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |