Nannocystis exedens Na e619 is a bacterium that builds a fruiting body and was isolated from soil with plant residues.
Bacteria| @ref 20215 |
Last LPSN update
2026-05-29 08:29:51 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Deltaproteobacteria |
| Order Myxococcales |
| Family Nannocystaceae |
| Genus Nannocystis |
| Species Nannocystis exedens |
| Full scientific name Nannocystis exedens Reichenbach 1970 (Approved Lists 1980) |
| @ref | Forms multicellular complex | Complex name | |
|---|---|---|---|
| 18281 | fruiting body |  |
| @ref | Name | Growth | Composition | |
|---|---|---|---|---|
| 18281 | CA2 AGAR | Ingredients: Stock solution 1 (in 100ml): KNO3 7.5g K2HPO4 7.5g Stock solution 2 (in 100ml): MgSO4 x 7H2O 1.5g Stock solution 3 (in 100ml): CaCl2 0.2g FeCl3 0.15g Basal medium: Agar 1.5% Preparation / Remarks: after autoclaving to: a) 1% (v/v) of the 3 stock solutions b) 1% glucose c) trace elements | | |
| 18281 | CHITIN 7 AGAR | Covering agar (thin layer): MgSO4 x 7H2O 0.1% K2HPO4 0.02% Agar 1.5% Preparation / Remarks: pH 7.2 After autoclaving add 30 mL of sterile Chitin suspension (22.5 g/L Chitin in H2O) to 100 mL of the medium and pour on w-agar plates | | |
| 18281 | COLE AGAR | Ingredients: CaCl2 x 2 H2O 1.3g Agar (Difco) 15.0g Distilled water 1000.0ml Preparation / Remarks: pH 7.2 (KOH) autoclaved Pour the plates and streak living E.coli cells | | |
| 18281 | KAN 2 AGAR | Ingredients: Casitone (Difco) 0.1% Yeast extract (Difco) 0.05% CaCl2 x 2H2O 0.02% MgSO4 x 7H2O 0.05% Agar 1.5% KNO3 0.1% Kanamycin-sulfate 100 mg/L Preparation / Remarks: pH 7.2 after autoclaving add: Glucose 0.2% (autoclaved separately) 100 mg/L Kanamycin-sulfate (sterilized by filtration) | | |
| 18281 | KAN 3 AGAR | Ingredients: Casitone (Difco) 0.1% Yeast extract (Difco) 0.05% CaCl2 x 2H2O 0.02% MgSO4 x 7H2O 0.05% Agar 1.5% KNO3 0.1% Preparation / Remarks: pH 7.2 after autoclaving add: Glucose 0.2% (autoclaved separately) 250 mg/L Kanamycin-sulfate (sterilized by filtration) | | |
| 18281 | Myx MEDIUM | Ingredients: Peptone (Difco) 1% Glucose 1% Yeast extract (Difco) 0.1% Phosphate buffer 0.01 M pH 6.5 Aerobacter aerogenes (sterilized with formalin) 500 mg/L (dry weight) as described by Kerr, N.S. (1963) The Growth of Myxamoebae of the True Slime Mould, Didymium nigripes, in Axenic Culture. J Gen Microbiol 32: 409-416. | | |
| 18281 | PROBION L AGAR | Ingredients: Probion L 600 (Hoechst) 0.8% MgSO4 x 7H2O 0.1% CaCl2 x 2H2O 0.1% Agar 1.5% Preparation / Remarks: pH 7.2 autoclaved | | |
| 18281 | TOLI AGAR | Ingredients: CaCl2 x 2 H2O1.3g Agar (Difco)15.0g Distilled water1000.0ml Preparation / Remarks: pH 7.2 (KOH) autoclaved Pour the plates and streak autoclaved E.coli cells | | |
| 18281 | VY/2 AGAR | Ingredients: Baker's yeast 0.5% (based on fresh weight) CaCl2 0.1% Agar 1.5% Vitamin B12 0.05 % Preparation / Remarks: pH 7.2 autoclaved | | |
| 18281 | KAN 1 AGAR | Ingredients: Casitone (Difco) 0.1% Yeast extract (Difco) 0.05% CaCl2 x 2H2O 0.02% MgSO4 x 7H2O 0.05% Agar 1.5% KNO3 0.1% Preparation / Remarks: pH 7.2 after autoclaving add: glucose 0.2% (autoclaved separately) 50 mg/L Kanamycin-sulfate (sterilized by filtration) | | |
| 18281 | SKIM MILK 2 AGAR | Ingredients: cy-Agar 300 ml Skim milk (Oxoid) 15g H2O 60 ml Preparation / Remarks: 300 ml cy-agar autoclaved. Separately 15 g skim milk (Oxoid) in 60 ml water and exactly 15 min autoclaving at 115 °C. Mix the two and pour a thin layer on CA2-plates. | | |
| 18281 | SKIM MILK 3 AGAR | Ingredients: cy-Agar 300 ml Skim milk (Oxoid) 15g H2O 60 ml Preparation / Remarks: 300 ml cy-agar autoclaved. Separately 15 g skim milk (Oxoid) in 60 ml water and exactly 15 min autoclaving at 115 °C. Mix the two and pour a thin layer on CYG2-plates. | |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 |   |
|
| 66794 | glycine betaine biosynthesis | 100 | 5 of 5 | |
|
| 66794 | biotin biosynthesis | 100 | 4 of 4 | |
|
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | |
|
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | |
|
| 66794 | ethanol fermentation | 100 | 2 of 2 | |
|
| 66794 | aspartate and asparagine metabolism | 100 | 9 of 9 | |
|
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | |
|
| 66794 | glycogen metabolism | 100 | 5 of 5 | |
|
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | |
|
| 66794 | adipate degradation | 100 | 2 of 2 | |
|
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 100 | 6 of 6 | |
|
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | |
|
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | |
|
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | |
|
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | |
|
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | |
|
| 66794 | folate polyglutamylation | 100 | 1 of 1 | |
|
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | |
|
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | |
|
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | |
|
| 66794 | serine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | NAD metabolism | 88.89 | 16 of 18 | |
|
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | |
|
| 66794 | valine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | |
|
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | |
|
| 66794 | alanine metabolism | 86.21 | 25 of 29 | |
|
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | |
|
| 66794 | heme metabolism | 85.71 | 12 of 14 | |
|
| 66794 | leucine metabolism | 84.62 | 11 of 13 | |
|
| 66794 | selenocysteine biosynthesis | 83.33 | 5 of 6 | |
|
| 66794 | cholesterol biosynthesis | 81.82 | 9 of 11 | |
|
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | |
|
| 66794 | hydrogen production | 80 | 4 of 5 | |
|
| 66794 | starch degradation | 80 | 8 of 10 | |
|
| 66794 | threonine metabolism | 80 | 8 of 10 | |
|
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | |
|
| 66794 | phenylacetate degradation (aerobic) | 80 | 4 of 5 | |
|
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | |
|
| 66794 | cellulose degradation | 80 | 4 of 5 | |
|
| 66794 | propionate fermentation | 80 | 8 of 10 | |
|
| 66794 | tryptophan metabolism | 78.95 | 30 of 38 | |
|
| 66794 | glutamate and glutamine metabolism | 78.57 | 22 of 28 | |
|
| 66794 | photosynthesis | 78.57 | 11 of 14 | |
|
| 66794 | pyrimidine metabolism | 77.78 | 35 of 45 | |
|
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | |
|
| 66794 | vitamin B1 metabolism | 76.92 | 10 of 13 | |
|
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | |
|
| 66794 | urea cycle | 76.92 | 10 of 13 | |
|
| 66794 | methionine metabolism | 76.92 | 20 of 26 | |
|
| 66794 | glycolysis | 76.47 | 13 of 17 | |
|
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | |
|
| 66794 | butanoate fermentation | 75 | 3 of 4 | |
|
| 66794 | gluconeogenesis | 75 | 6 of 8 | |
|
| 66794 | catecholamine biosynthesis | 75 | 3 of 4 | |
|
| 66794 | purine metabolism | 74.47 | 70 of 94 | |
|
| 66794 | lipid metabolism | 74.19 | 23 of 31 | |
|
| 66794 | vitamin B6 metabolism | 72.73 | 8 of 11 | |
|
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | |
|
| 66794 | proline metabolism | 72.73 | 8 of 11 | |
|
| 66794 | arachidonic acid metabolism | 72.22 | 13 of 18 | |
|
| 66794 | propanol degradation | 71.43 | 5 of 7 | |
|
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | |
|
| 66794 | citric acid cycle | 71.43 | 10 of 14 | |
|
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | |
|
| 66794 | non-pathway related | 71.05 | 27 of 38 | |
|
| 66794 | arginine metabolism | 70.83 | 17 of 24 | |
|
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | lysine metabolism | 66.67 | 28 of 42 | |
|
| 66794 | octane oxidation | 66.67 | 2 of 3 | |
|
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | |
|
| 66794 | chlorophyll metabolism | 66.67 | 12 of 18 | |
|
| 66794 | cyanate degradation | 66.67 | 2 of 3 | |
|
| 66794 | acetoin degradation | 66.67 | 2 of 3 | |
|
| 66794 | methane metabolism | 66.67 | 2 of 3 | |
|
| 66794 | lipid A biosynthesis | 66.67 | 6 of 9 | |
|
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | histidine metabolism | 65.52 | 19 of 29 | |
|
| 66794 | polyamine pathway | 65.22 | 15 of 23 | |
|
| 66794 | bile acid biosynthesis, neutral pathway | 64.71 | 11 of 17 | |
|
| 66794 | glutathione metabolism | 64.29 | 9 of 14 | |
|
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | |
|
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | |
|
| 66794 | dTDPLrhamnose biosynthesis | 62.5 | 5 of 8 | |
|
| 66794 | C4 and CAM-carbon fixation | 62.5 | 5 of 8 | |
|
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | |
|
| 66794 | flavin biosynthesis | 60 | 9 of 15 | |
|
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | |
|
| 66794 | benzoyl-CoA degradation | 57.14 | 4 of 7 | |
|
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | |
|
| 66794 | degradation of sugar alcohols | 56.25 | 9 of 16 | |
|
| 66794 | androgen and estrogen metabolism | 56.25 | 9 of 16 | |
|
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | |
|
| 66794 | daunorubicin biosynthesis | 55.56 | 5 of 9 | |
|
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | |
|
| 66794 | ascorbate metabolism | 54.55 | 12 of 22 | |
|
| 66794 | phenylpropanoid biosynthesis | 53.85 | 7 of 13 | |
|
| 66794 | 3-phenylpropionate degradation | 53.33 | 8 of 15 | |
|
| 66794 | toluene degradation | 50 | 2 of 4 | |
|
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | |
|
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | |
|
| 66794 | acetate fermentation | 50 | 2 of 4 | |
|
| 66794 | phenol degradation | 50 | 10 of 20 | |
|
| 66794 | carnitine metabolism | 50 | 4 of 8 | |
|
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | |
|
| 66794 | carotenoid biosynthesis | 50 | 11 of 22 | |
|
| 66794 | sphingosine metabolism | 50 | 3 of 6 | |
|
| 66794 | coenzyme M biosynthesis | 50 | 5 of 10 | |
|
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | |
|
| 66794 | isoprenoid biosynthesis | 50 | 13 of 26 | |
|
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | |
|
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | |
|
| 66794 | sulfate reduction | 46.15 | 6 of 13 | |
|
| 66794 | oxidative phosphorylation | 43.96 | 40 of 91 | |
|
| 66794 | cardiolipin biosynthesis | 42.86 | 3 of 7 | |
|
| 66794 | aclacinomycin biosynthesis | 42.86 | 3 of 7 | |
|
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | |
|
| 66794 | glycine metabolism | 40 | 4 of 10 | |
|
| 66794 | gallate degradation | 40 | 2 of 5 | |
|
| 66794 | creatinine degradation | 40 | 2 of 5 | |
|
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | |
|
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | |
|
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | |
|
| 66794 | vitamin K metabolism | 40 | 2 of 5 | |
|
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | |
|
| 66794 | phosphatidylethanolamine bioynthesis | 38.46 | 5 of 13 | |
|
| 66794 | degradation of pentoses | 35.71 | 10 of 28 | |
|
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | |
|
| 66794 | ginsenoside metabolism | 31.25 | 5 of 16 | |
|
| 66794 | 4-hydroxyphenylacetate degradation | 30 | 3 of 10 | |
|
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | |
|
| 66794 | alginate biosynthesis | 25 | 1 of 4 | |
|
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | |
|
| 66794 | lactate fermentation | 25 | 1 of 4 | |
|
| 66794 | methanogenesis from CO2 | 25 | 3 of 12 | |
|
| 66794 | degradation of sugar acids | 24 | 6 of 25 | |
|
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive20893.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
License