Nannocystis exedens (Na e1113)
BacDive ID
21983
Type strain
Strain Designation
Na e1113
Culture col. no.
Na e1113
NCBI tax ID(s)
54
Special Collections
Reichenbach collection
Nannocystis exedens Na e1113 is a bacterium that builds a fruiting body and was isolated from soil with rotting wood and other plant residues.
BacteriaName and taxonomic classification
Culture Collection Numbers
Na e1113| @ref 20215 |
Last LPSN update
2026-05-29 08:30:07 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Deltaproteobacteria |
| Order Myxococcales |
| Family Nannocystaceae |
| Genus Nannocystis |
| Species Nannocystis exedens |
| Full scientific name Nannocystis exedens Reichenbach 1970 (Approved Lists 1980) |
Morphology
Multicellular morphology
| @ref | Forms multicellular complex | Complex name | |
|---|---|---|---|
| 18281 | fruiting body |  |
Culture and growth conditions
Culture medium
| @ref | Name | Growth | Composition | |
|---|---|---|---|---|
| 18281 | COLE AGAR | Ingredients: CaCl2 x 2 H2O 1.3g Agar (Difco) 15.0g Distilled water 1000.0ml Preparation / Remarks: pH 7.2 (KOH) autoclaved Pour the plates and streak living E.coli cells | | |
| 18281 | TOLI AGAR | Ingredients: CaCl2 x 2 H2O1.3g Agar (Difco)15.0g Distilled water1000.0ml Preparation / Remarks: pH 7.2 (KOH) autoclaved Pour the plates and streak autoclaved E.coli cells | | |
| 18281 | VY/2 AGAR | Ingredients: Baker's yeast 0.5% (based on fresh weight) CaCl2 0.1% Agar 1.5% Vitamin B12 0.05 % Preparation / Remarks: pH 7.2 autoclaved | |
Physiology and metabolism
Pathway annotation
Computationally determined by 
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 |   |
|
| 66794 | glycine betaine biosynthesis | 100 | 5 of 5 | |
|
| 66794 | biotin biosynthesis | 100 | 4 of 4 | |
|
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | |
|
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | |
|
| 66794 | ethanol fermentation | 100 | 2 of 2 | |
|
| 66794 | aspartate and asparagine metabolism | 100 | 9 of 9 | |
|
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | |
|
| 66794 | glycogen metabolism | 100 | 5 of 5 | |
|
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | |
|
| 66794 | adipate degradation | 100 | 2 of 2 | |
|
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 100 | 6 of 6 | |
|
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | |
|
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | |
|
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | |
|
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | |
|
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | |
|
| 66794 | folate polyglutamylation | 100 | 1 of 1 | |
|
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | |
|
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | |
|
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | |
|
| 66794 | serine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | NAD metabolism | 88.89 | 16 of 18 | |
|
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | |
|
| 66794 | valine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | |
|
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | |
|
| 66794 | alanine metabolism | 86.21 | 25 of 29 | |
|
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | |
|
| 66794 | heme metabolism | 85.71 | 12 of 14 | |
|
| 66794 | leucine metabolism | 84.62 | 11 of 13 | |
|
| 66794 | selenocysteine biosynthesis | 83.33 | 5 of 6 | |
|
| 66794 | cholesterol biosynthesis | 81.82 | 9 of 11 | |
|
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | |
|
| 66794 | hydrogen production | 80 | 4 of 5 | |
|
| 66794 | starch degradation | 80 | 8 of 10 | |
|
| 66794 | threonine metabolism | 80 | 8 of 10 | |
|
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | |
|
| 66794 | phenylacetate degradation (aerobic) | 80 | 4 of 5 | |
|
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | |
|
| 66794 | cellulose degradation | 80 | 4 of 5 | |
|
| 66794 | propionate fermentation | 80 | 8 of 10 | |
|
| 66794 | tryptophan metabolism | 78.95 | 30 of 38 | |
|
| 66794 | glutamate and glutamine metabolism | 78.57 | 22 of 28 | |
|
| 66794 | photosynthesis | 78.57 | 11 of 14 | |
|
| 66794 | pyrimidine metabolism | 77.78 | 35 of 45 | |
|
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | |
|
| 66794 | vitamin B1 metabolism | 76.92 | 10 of 13 | |
|
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | |
|
| 66794 | urea cycle | 76.92 | 10 of 13 | |
|
| 66794 | methionine metabolism | 76.92 | 20 of 26 | |
|
| 66794 | glycolysis | 76.47 | 13 of 17 | |
|
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | |
|
| 66794 | butanoate fermentation | 75 | 3 of 4 | |
|
| 66794 | gluconeogenesis | 75 | 6 of 8 | |
|
| 66794 | catecholamine biosynthesis | 75 | 3 of 4 | |
|
| 66794 | purine metabolism | 74.47 | 70 of 94 | |
|
| 66794 | lipid metabolism | 74.19 | 23 of 31 | |
|
| 66794 | vitamin B6 metabolism | 72.73 | 8 of 11 | |
|
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | |
|
| 66794 | proline metabolism | 72.73 | 8 of 11 | |
|
| 66794 | arachidonic acid metabolism | 72.22 | 13 of 18 | |
|
| 66794 | propanol degradation | 71.43 | 5 of 7 | |
|
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | |
|
| 66794 | citric acid cycle | 71.43 | 10 of 14 | |
|
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | |
|
| 66794 | non-pathway related | 71.05 | 27 of 38 | |
|
| 66794 | arginine metabolism | 70.83 | 17 of 24 | |
|
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | lysine metabolism | 66.67 | 28 of 42 | |
|
| 66794 | octane oxidation | 66.67 | 2 of 3 | |
|
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | |
|
| 66794 | chlorophyll metabolism | 66.67 | 12 of 18 | |
|
| 66794 | cyanate degradation | 66.67 | 2 of 3 | |
|
| 66794 | acetoin degradation | 66.67 | 2 of 3 | |
|
| 66794 | methane metabolism | 66.67 | 2 of 3 | |
|
| 66794 | lipid A biosynthesis | 66.67 | 6 of 9 | |
|
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | histidine metabolism | 65.52 | 19 of 29 | |
|
| 66794 | polyamine pathway | 65.22 | 15 of 23 | |
|
| 66794 | bile acid biosynthesis, neutral pathway | 64.71 | 11 of 17 | |
|
| 66794 | glutathione metabolism | 64.29 | 9 of 14 | |
|
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | |
|
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | |
|
| 66794 | dTDPLrhamnose biosynthesis | 62.5 | 5 of 8 | |
|
| 66794 | C4 and CAM-carbon fixation | 62.5 | 5 of 8 | |
|
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | |
|
| 66794 | flavin biosynthesis | 60 | 9 of 15 | |
|
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | |
|
| 66794 | benzoyl-CoA degradation | 57.14 | 4 of 7 | |
|
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | |
|
| 66794 | degradation of sugar alcohols | 56.25 | 9 of 16 | |
|
| 66794 | androgen and estrogen metabolism | 56.25 | 9 of 16 | |
|
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | |
|
| 66794 | daunorubicin biosynthesis | 55.56 | 5 of 9 | |
|
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | |
|
| 66794 | ascorbate metabolism | 54.55 | 12 of 22 | |
|
| 66794 | phenylpropanoid biosynthesis | 53.85 | 7 of 13 | |
|
| 66794 | 3-phenylpropionate degradation | 53.33 | 8 of 15 | |
|
| 66794 | toluene degradation | 50 | 2 of 4 | |
|
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | |
|
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | |
|
| 66794 | acetate fermentation | 50 | 2 of 4 | |
|
| 66794 | phenol degradation | 50 | 10 of 20 | |
|
| 66794 | carnitine metabolism | 50 | 4 of 8 | |
|
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | |
|
| 66794 | carotenoid biosynthesis | 50 | 11 of 22 | |
|
| 66794 | sphingosine metabolism | 50 | 3 of 6 | |
|
| 66794 | coenzyme M biosynthesis | 50 | 5 of 10 | |
|
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | |
|
| 66794 | isoprenoid biosynthesis | 50 | 13 of 26 | |
|
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | |
|
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | |
|
| 66794 | sulfate reduction | 46.15 | 6 of 13 | |
|
| 66794 | oxidative phosphorylation | 43.96 | 40 of 91 | |
|
| 66794 | cardiolipin biosynthesis | 42.86 | 3 of 7 | |
|
| 66794 | aclacinomycin biosynthesis | 42.86 | 3 of 7 | |
|
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | |
|
| 66794 | glycine metabolism | 40 | 4 of 10 | |
|
| 66794 | gallate degradation | 40 | 2 of 5 | |
|
| 66794 | creatinine degradation | 40 | 2 of 5 | |
|
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | |
|
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | |
|
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | |
|
| 66794 | vitamin K metabolism | 40 | 2 of 5 | |
|
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | |
|
| 66794 | phosphatidylethanolamine bioynthesis | 38.46 | 5 of 13 | |
|
| 66794 | degradation of pentoses | 35.71 | 10 of 28 | |
|
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | |
|
| 66794 | ginsenoside metabolism | 31.25 | 5 of 16 | |
|
| 66794 | 4-hydroxyphenylacetate degradation | 30 | 3 of 10 | |
|
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | |
|
| 66794 | alginate biosynthesis | 25 | 1 of 4 | |
|
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | |
|
| 66794 | lactate fermentation | 25 | 1 of 4 | |
|
| 66794 | methanogenesis from CO2 | 25 | 3 of 12 | |
|
| 66794 | degradation of sugar acids | 24 | 6 of 25 | |
|
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 | |
How to cite
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive21983.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain dataIsabel Schober, Julia Koblitz, Joaquim Sardà Carbasse, Christian Ebeling, Marvin Leon Schmidt, Adam Podstawka, Rohit Gupta, Vinodh Ilangovan, Javad Chamanara, Jörg Overmann, Lorenz Christian Reimer
Nucleic Acids Research; database issue 2025.
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