Nannocystis exedens Na e1 is a bacterium that builds a fruiting body and was isolated from soil.
genome sequence 16S sequence Bacteria SI-ID 47046
| @ref 20215 |
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Last LPSN update
2026-05-29 08:27:16 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Deltaproteobacteria |
| Order Myxococcales |
| Family Nannocystaceae |
| Genus Nannocystis |
| Species Nannocystis exedens |
| Full scientific name Nannocystis exedens Reichenbach 1970 (Approved Lists 1980) |
| @ref | Forms multicellular complex | Complex name | |
|---|---|---|---|
| 18281 | fruiting body |  |
| @ref: | 2050 |
| multimedia content: | Na_e1_M7125_S2793.jpg |
| multimedia.multimedia content: | /dsmz_profile/Pictures_DSMZ_Web/Nannocystis_exedens/Na_e1 |
| caption: | Na e1; DSM 71 |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 2050 |
| multimedia content: | Na_e1_M7131_S2794.jpg |
| multimedia.multimedia content: | /dsmz_profile/Pictures_DSMZ_Web/Nannocystis_exedens/Na_e1 |
| caption: | Na e1; DSM 71 |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 2050 |
| multimedia content: | DSM_71.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_71.jpg |
| caption: | colony of DSM 71 on medium 9 at 28 °C |
| intellectual property rights: | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2050 | VY/2 AGAR (DSMZ Medium 9) | Medium recipe at MediaDive  | Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 2050 | positive | growth | 30 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 99.517 |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 |   |
|
| 66794 | glycine betaine biosynthesis | 100 | 5 of 5 | |
|
| 66794 | biotin biosynthesis | 100 | 4 of 4 | |
|
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | |
|
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | |
|
| 66794 | ethanol fermentation | 100 | 2 of 2 | |
|
| 66794 | aspartate and asparagine metabolism | 100 | 9 of 9 | |
|
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | |
|
| 66794 | glycogen metabolism | 100 | 5 of 5 | |
|
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | |
|
| 66794 | adipate degradation | 100 | 2 of 2 | |
|
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 100 | 6 of 6 | |
|
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | |
|
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | |
|
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | |
|
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | |
|
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | |
|
| 66794 | folate polyglutamylation | 100 | 1 of 1 | |
|
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | |
|
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | |
|
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | |
|
| 66794 | serine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | NAD metabolism | 88.89 | 16 of 18 | |
|
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | |
|
| 66794 | valine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | |
|
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | |
|
| 66794 | alanine metabolism | 86.21 | 25 of 29 | |
|
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | |
|
| 66794 | heme metabolism | 85.71 | 12 of 14 | |
|
| 66794 | leucine metabolism | 84.62 | 11 of 13 | |
|
| 66794 | selenocysteine biosynthesis | 83.33 | 5 of 6 | |
|
| 66794 | cholesterol biosynthesis | 81.82 | 9 of 11 | |
|
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | |
|
| 66794 | hydrogen production | 80 | 4 of 5 | |
|
| 66794 | starch degradation | 80 | 8 of 10 | |
|
| 66794 | threonine metabolism | 80 | 8 of 10 | |
|
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | |
|
| 66794 | phenylacetate degradation (aerobic) | 80 | 4 of 5 | |
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| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | |
|
| 66794 | cellulose degradation | 80 | 4 of 5 | |
|
| 66794 | propionate fermentation | 80 | 8 of 10 | |
|
| 66794 | tryptophan metabolism | 78.95 | 30 of 38 | |
|
| 66794 | glutamate and glutamine metabolism | 78.57 | 22 of 28 | |
|
| 66794 | photosynthesis | 78.57 | 11 of 14 | |
|
| 66794 | pyrimidine metabolism | 77.78 | 35 of 45 | |
|
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | |
|
| 66794 | vitamin B1 metabolism | 76.92 | 10 of 13 | |
|
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | |
|
| 66794 | urea cycle | 76.92 | 10 of 13 | |
|
| 66794 | methionine metabolism | 76.92 | 20 of 26 | |
|
| 66794 | glycolysis | 76.47 | 13 of 17 | |
|
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | |
|
| 66794 | butanoate fermentation | 75 | 3 of 4 | |
|
| 66794 | gluconeogenesis | 75 | 6 of 8 | |
|
| 66794 | catecholamine biosynthesis | 75 | 3 of 4 | |
|
| 66794 | purine metabolism | 74.47 | 70 of 94 | |
|
| 66794 | lipid metabolism | 74.19 | 23 of 31 | |
|
| 66794 | vitamin B6 metabolism | 72.73 | 8 of 11 | |
|
| 66794 | metabolism of disaccharids | 72.73 | 8 of 11 | |
|
| 66794 | proline metabolism | 72.73 | 8 of 11 | |
|
| 66794 | arachidonic acid metabolism | 72.22 | 13 of 18 | |
|
| 66794 | propanol degradation | 71.43 | 5 of 7 | |
|
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | |
|
| 66794 | citric acid cycle | 71.43 | 10 of 14 | |
|
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | |
|
| 66794 | non-pathway related | 71.05 | 27 of 38 | |
|
| 66794 | arginine metabolism | 70.83 | 17 of 24 | |
|
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | lysine metabolism | 66.67 | 28 of 42 | |
|
| 66794 | octane oxidation | 66.67 | 2 of 3 | |
|
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | |
|
| 66794 | chlorophyll metabolism | 66.67 | 12 of 18 | |
|
| 66794 | cyanate degradation | 66.67 | 2 of 3 | |
|
| 66794 | acetoin degradation | 66.67 | 2 of 3 | |
|
| 66794 | methane metabolism | 66.67 | 2 of 3 | |
|
| 66794 | lipid A biosynthesis | 66.67 | 6 of 9 | |
|
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | histidine metabolism | 65.52 | 19 of 29 | |
|
| 66794 | polyamine pathway | 65.22 | 15 of 23 | |
|
| 66794 | bile acid biosynthesis, neutral pathway | 64.71 | 11 of 17 | |
|
| 66794 | glutathione metabolism | 64.29 | 9 of 14 | |
|
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | |
|
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | |
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| 66794 | dTDPLrhamnose biosynthesis | 62.5 | 5 of 8 | |
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| 66794 | C4 and CAM-carbon fixation | 62.5 | 5 of 8 | |
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| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | |
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| 66794 | flavin biosynthesis | 60 | 9 of 15 | |
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| 66794 | lipoate biosynthesis | 60 | 3 of 5 | |
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| 66794 | benzoyl-CoA degradation | 57.14 | 4 of 7 | |
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| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | |
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| 66794 | degradation of sugar alcohols | 56.25 | 9 of 16 | |
|
| 66794 | androgen and estrogen metabolism | 56.25 | 9 of 16 | |
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| 66794 | cysteine metabolism | 55.56 | 10 of 18 | |
|
| 66794 | daunorubicin biosynthesis | 55.56 | 5 of 9 | |
|
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | |
|
| 66794 | ascorbate metabolism | 54.55 | 12 of 22 | |
|
| 66794 | phenylpropanoid biosynthesis | 53.85 | 7 of 13 | |
|
| 66794 | 3-phenylpropionate degradation | 53.33 | 8 of 15 | |
|
| 66794 | toluene degradation | 50 | 2 of 4 | |
|
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | |
|
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | |
|
| 66794 | acetate fermentation | 50 | 2 of 4 | |
|
| 66794 | phenol degradation | 50 | 10 of 20 | |
|
| 66794 | carnitine metabolism | 50 | 4 of 8 | |
|
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | |
|
| 66794 | carotenoid biosynthesis | 50 | 11 of 22 | |
|
| 66794 | sphingosine metabolism | 50 | 3 of 6 | |
|
| 66794 | coenzyme M biosynthesis | 50 | 5 of 10 | |
|
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | |
|
| 66794 | isoprenoid biosynthesis | 50 | 13 of 26 | |
|
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | |
|
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | |
|
| 66794 | sulfate reduction | 46.15 | 6 of 13 | |
|
| 66794 | oxidative phosphorylation | 43.96 | 40 of 91 | |
|
| 66794 | cardiolipin biosynthesis | 42.86 | 3 of 7 | |
|
| 66794 | aclacinomycin biosynthesis | 42.86 | 3 of 7 | |
|
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | |
|
| 66794 | glycine metabolism | 40 | 4 of 10 | |
|
| 66794 | gallate degradation | 40 | 2 of 5 | |
|
| 66794 | creatinine degradation | 40 | 2 of 5 | |
|
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | |
|
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | |
|
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | |
|
| 66794 | vitamin K metabolism | 40 | 2 of 5 | |
|
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | |
|
| 66794 | phosphatidylethanolamine bioynthesis | 38.46 | 5 of 13 | |
|
| 66794 | degradation of pentoses | 35.71 | 10 of 28 | |
|
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | |
|
| 66794 | ginsenoside metabolism | 31.25 | 5 of 16 | |
|
| 66794 | 4-hydroxyphenylacetate degradation | 30 | 3 of 10 | |
|
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | |
|
| 66794 | alginate biosynthesis | 25 | 1 of 4 | |
|
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | |
|
| 66794 | lactate fermentation | 25 | 1 of 4 | |
|
| 66794 | methanogenesis from CO2 | 25 | 3 of 12 | |
|
| 66794 | degradation of sugar acids | 24 | 6 of 25 | |
|
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 | |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM234391v1 assembly for Nannocystis exedens DSM 71 | contig | GCA_002343915   | 54.28  | 2767802756  | 54 | 73.31 | |
| 66792 | IMG-taxon 2597490371 annotated assembly for Nannocystis exedens ATCC 25963 | scaffold | GCA_900112715 | 54.3 | 2597490371 | 54 | 24.08 | |
| 2050 | GC-content (mol%)70.9 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genomic Analysis of the Rare Slightly Halophilic Myxobacterium "Paraliomyxa miuraensis" SMH-27-4, the Producer of the Antibiotic Miuraenamide A. | Liu Y, Ojika M. | Microorganisms | 10.3390/microorganisms11020371 | 2023 | |
| Genetics | Comparative genomics and transcriptomics insight into myxobacterial metabolism potentials and multiple predatory strategies. | Wang C, Xiao Y, Wang Y, Liu Y, Yao Q, Zhu H. | Front Microbiol | 10.3389/fmicb.2023.1146523 | 2023 | |
| Proteome | DnaK duplication and specialization in bacteria correlates with increased proteome complexity. | Pan Z, Zhuo L, Wan T-y, Chen R-y, Li Y-z. | mSystems | 10.1128/msystems.01154-23 | 2024 | |
| MYXO-CTERM sorting tag directs proteins to the cell surface via the type II secretion system. | Sah GP, Cao P, Wall D. | Mol Microbiol | 10.1111/mmi.14473 | 2020 | | |
| Genetics | Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics. | Garcia R, La Clair JJ, Muller R. | Mar Drugs | 10.3390/md16090303 | 2018 | |
| Genetics | Assembly strategies for rubber-degrading microbial consortia based on omics tools. | Cui C, Jiang M, Zhang C, Zhang N, Jin FJ, Li T, Lee HG, Jin L. | Front Bioeng Biotechnol | 10.3389/fbioe.2023.1326395 | 2023 | |
| Genetics | Marine-derived myxobacteria of the suborder Nannocystineae: An underexplored source of structurally intriguing and biologically active metabolites. | Davila-Cespedes A, Hufendiek P, Crusemann M, Schaberle TF, Konig GM. | Beilstein J Org Chem | 10.3762/bjoc.12.96 | 2016 | |
| Metabolism | Analysis of the Genome and Metabolome of Marine Myxobacteria Reveals High Potential for Biosynthesis of Novel Specialized Metabolites. | Amiri Moghaddam J, Crusemann M, Alanjary M, Harms H, Davila-Cespedes A, Blom J, Poehlein A, Ziemert N, Konig GM, Schaberle TF. | Sci Rep | 10.1038/s41598-018-34954-y | 2018 | |
| Phylogeny | In silico functional and evolutionary analyses of rubber oxygenases (RoxA and RoxB). | Sharma V, Mobeen F, Prakash T. | 3 Biotech | 10.1007/s13205-020-02371-6 | 2020 | |
| Sterol Synthesis in Diverse Bacteria. | Wei JH, Yin X, Welander PV. | Front Microbiol | 10.3389/fmicb.2016.00990 | 2016 | | |
| A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples. | Widmer F, Seidler RJ, Gillevet PM, Watrud LS, Di Giovanni GD. | Appl Environ Microbiol | 10.1128/aem.64.7.2545-2553.1998 | 1998 | | |
| Phylogeny | Phylogenetic analysis of the bacterial communities in marine sediments. | Gray JP, Herwig RP. | Appl Environ Microbiol | 10.1128/aem.62.11.4049-4059.1996 | 1996 | |
| Genetics | Draft Genome Sequence of the Fruiting Myxobacterium Nannocystis exedens DSM 71. | Treuner-Lange A, Bruckskotten M, Rupp O, Goesmann A, Sogaard-Andersen L | Genome Announc | 10.1128/genomeA.01227-17 | 2017 | |
| Phylogeny | Nannocystis konarekensis sp. nov., a novel myxobacterium from an Iranian desert. | Mohr KI, Moradi A, Glaeser SP, Kampfer P, Gemperlein K, Nubel U, Schumann P, Muller R, Wink J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002569 | 2018 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive10177.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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