Name: Burkholderia gladioli DSM 11318
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1913

Type strain:

Species: Burkholderia gladioli

Culture col. no.: DSM 11318, ATCC 33664, LMAU P25, LMD 38.18, LMD 91.24, LMG 11626, LMG 11627, NCIB 9450, CCUG 3374, USCC 2338, JCM 10561, NCCB 38018, NCIMB 9450, CIP 104582

Strain history: CIP <- 1995, N. Zhao, Weifang Med. Univ., Shandong Province, China: strain T7707-a, "Pseudomonas farinofermentans" <- Yu-Pei Zhang, Heilonjing Provincial Anti-epidemic Station

NCBI tax ID(s): 28095 (species)

SI-ID 264242

LMG 11626, ATCC 33664, DSM 11318, JCM 10561, LMG 11627, NCIMB 9450, NCIB 9450, CIP 104582, LMD 38.18, LMD 91.24, BCRC 15827, CCRC 15827, CCUG 3374, CFBP 4790

Special Collections

Other strains from Burkholderia gladioli

Section

Burkholderia gladioli DSM 11318 is an obligate aerobe, Gram-negative, motile plant pathogen that was isolated from poisoned coconut food.

Gram-negative
motile
rod-shaped
obligate aerobe
plant pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Burkholderia*
	Species	**Burkholderia gladioli**
	Full Scientific Name (LPSN)	Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993

	Synonym	Pseudomonas gladioli
	Synonym	Pseudomonas cocovenenans
	Synonym	Pseudomonas antimicrobica
	Synonym	Burkholderia cocovenenans

Information on morphological and physiological properties Morphology

[Ref.: #119635]	Gram stain	negative

[Ref.: #119635]	Cell shape	rod-shaped

[Ref.: #119635]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4294]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #4294]

Culture medium growth

[Ref.: #4294]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4294]

Culture medium composition

expand / minimize

[Ref.: #39056]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39056]

Culture medium growth

[Ref.: #39056]

Culture medium composition

expand / minimize

[Ref.: #119635]

Culture medium

CIP Medium 3

[Ref.: #119635]

Culture medium growth

[Ref.: #119635]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119635]

Culture medium

CIP Medium 72

[Ref.: #119635]

Culture medium growth

[Ref.: #119635]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #4294]	growth	28 °C
[Ref.: #39056]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119635]

Oxygen tolerance

obligate aerobe

[Ref.: #4294]

Name of produced compound

toxoflavin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #119635]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #119635]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119635]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119635]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119635]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119635]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #4294]	23680	+	-	-	+/-	-	-	+/-	+	+	+	+	+	+	-	+	+	-	+	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119635]	8053	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4294]	Sample type/isolated from	poisoned coconut food
[Ref.: #4294]	Geographic location (country and/or sea, region)	Java
[Ref.: #4294]	Country	Indonesia
[Ref.: #4294]	Country ISO 3 Code	IDN
[Ref.: #4294]	Continent	Asia

[Ref.: #44657]	Sample type/isolated from	Poisonous 'bongkrek'
[Ref.: #44657]	Geographic location (country and/or sea, region)	Java
[Ref.: #44657]	Country	Indonesia
[Ref.: #44657]	Country ISO 3 Code	IDN
[Ref.: #44657]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Poisoned bongkrek
[Ref.: #67770]	Geographic location (country and/or sea, region)	Java
[Ref.: #67770]	Country	Indonesia
[Ref.: #67770]	Country ISO 3 Code	IDN
[Ref.: #67770]	Continent	Asia

[Ref.: #119635]	Sample type/isolated from	Food, Poisoning food, fermented corn flour
[Ref.: #119635]	Geographic location (country and/or sea, region)	Tonhe
[Ref.: #119635]	Country	China
[Ref.: #119635]	Country ISO 3 Code	CHN
[Ref.: #119635]	Continent	Asia
[Ref.: #119635]	Isolation date	1977
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Food
#Host	#Plants	#Decomposing plant
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4294]	Pathogenicity (plant)	yes
[Ref.: #4294]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119635]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Burkholderia gladioli gene for 16S rRNA, strain: ATCC 33664	AB021389	1498	GenBank ENA	28095 tax ID	*
[Ref.: #20218]	Burkholderia cocovenenans 16S ribosomal RNA gene, partial sequence	U96934	1505	GenBank ENA	28095 tax ID	*
[Ref.: #20218]	Burkholderia gladioli strain LMG 11626 16S ribosomal RNA gene, partial sequence	HQ849082	1124	GenBank ENA	28095 tax ID	*

Availability in culture collections External links

[Ref.: #4294]

Culture collection no.

DSM 11318, ATCC 33664, LMAU P25, LMD 38.18, LMD 91.24, LMG 11626, LMG 11627, NCIB 9450, CCUG 3374, USCC 2338, JCM 10561, NCCB 38018, NCIMB 9450, CIP 104582

[Ref.: #71558]

SI-ID 264242

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Comparative description of Pseudomonas cocovenenans (van Damme, Johannes, Cox, and Berends 1960) NCIB 9450T and strains isolated from cases of food poisoning caused by consumption of fermented corn flour in China.	Zhao NX, Ma MS, Zhang YP, Xu DC	Int J Syst Bacteriol	10.1099/00207713-40-4-452	1990	*
Enzymology	MM 42842, a new member of the monobactam family produced by Pseudomonas cocovenenans. I. Identification of the producing organism.	Gwynn MN, Box SJ, Brown AG, Gilpin ML	J Antibiot (Tokyo)	10.7164/antibiotics.41.1	1988	*
	Methods for genetic manipulation of Burkholderia gladioli pathovar cocovenenans.	Somprasong N, McMillan I, Karkhoff-Schweizer RR, Mongkolsuk S, Schweizer HP	BMC Res Notes	10.1186/1756-0500-3-308	2010	*

References

#4294

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11318

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39056 ; Curators of the CIP;
#44657 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3374
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#71558

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264242.1 )

#119635 Collection of Institut Pasteur ; Curators of the CIP; CIP 104582
* These data were automatically processed and therefore are not curated

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