Strain identifier

BacDive ID: 1913

Type strain: No

Species: Burkholderia gladioli

Strain history: CIP <- 1995, N. Zhao, Weifang Med. Univ., Shandong Province, China: strain T7707-a, "Pseudomonas farinofermentans" <- Yu-Pei Zhang, Heilonjing Provincial Anti-epidemic Station

NCBI tax ID(s): 28095 (species)

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General

@ref: 4294

BacDive-ID: 1913

DSM-Number: 11318

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped, plant pathogen

description: Burkholderia gladioli DSM 11318 is an obligate aerobe, mesophilic, Gram-negative plant pathogen that was isolated from poisoned coconut food.

NCBI tax id

  • NCBI tax id: 28095
  • Matching level: species

strain history

@refhistory
4294<- LMG <- LMD (Pseudomonas cocovenenans) <- W. Mertens
67770LMG 11626 <-- LMD <-- W. Mertens.
119635CIP <- 1995, N. Zhao, Weifang Med. Univ., Shandong Province, China: strain T7707-a, "Pseudomonas farinofermentans" <- Yu-Pei Zhang, Heilonjing Provincial Anti-epidemic Station

doi: 10.13145/bacdive1913.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia gladioli
  • full scientific name: Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993

  • synonyms

    @refsynonym
    20215Burkholderia cocovenenans
    20215Pseudomonas gladioli
    20215Pseudomonas antimicrobica
    20215Pseudomonas cocovenenans

@ref: 4294

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia gladioli

full scientific name: Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993

type strain: no

Morphology

cell morphology

  • @ref: 119635
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4294CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39056MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119635CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
119635CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
4294positivegrowth28
39056positivegrowth30
67770positivegrowth28

Physiology and metabolism

oxygen tolerance

  • @ref: 119635
  • oxygen tolerance: obligate aerobe

compound production

  • @ref: 4294
  • compound: toxoflavin

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11963517632nitrate+reduction
11963516301nitrite-reduction
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11963535581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119635oxidase-
119635catalase+1.11.1.6
119635urease-3.5.1.5
68382valine arylamidase-
68369cytochrome oxidase-1.9.3.1
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119635-+++-+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4294+--+/---+/-++++++-++-++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
4294poisoned coconut foodJavaIndonesiaIDNAsia
44657Poisonous 'bongkrek'JavaIndonesiaIDNAsia
67770Poisoned bongkrekJavaIndonesiaIDNAsia
119635Food, Poisoning food, fermented corn flourTonheChinaCHNAsia1977

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Food
#Host#Plants#Decomposing plant
#Host Body-Site#Plant#Fruit (Seed)

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
4294yes2Risk group (German classification)
1196351Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Burkholderia gladioli gene for 16S rRNA, strain: ATCC 33664AB0213891498nuccore28095
20218Burkholderia gladioli strain LMG 11626 16S ribosomal RNA gene, partial sequenceHQ8490821124nuccore28095
20218Burkholderia cocovenenans 16S ribosomal RNA gene, partial sequenceU969341505nuccore28095

External links

@ref: 4294

culture collection no.: DSM 11318, ATCC 33664, LMAU P25, LMD 38.18, LMD 91.24, LMG 11626, LMG 11627, NCIB 9450, CCUG 3374, USCC 2338, JCM 10561, NCCB 38018, NCIMB 9450, CIP 104582

straininfo link

  • @ref: 71558
  • straininfo: 264242

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny2275860Comparative description of Pseudomonas cocovenenans (van Damme, Johannes, Cox, and Berends 1960) NCIB 9450T and strains isolated from cases of food poisoning caused by consumption of fermented corn flour in China.Zhao NX, Ma MS, Zhang YP, Xu DCInt J Syst Bacteriol10.1099/00207713-40-4-4521990Antigens, Bacterial/immunology, China, DNA, Bacterial/analysis, Drug Resistance, Microbial, Eating, Fermentation, *Flour, Foodborne Diseases/*microbiology, Humans, Nucleic Acid Hybridization, Pseudomonas/*classification/genetics/immunology, Zea maysPathogenicity
Enzymology3346181MM 42842, a new member of the monobactam family produced by Pseudomonas cocovenenans. I. Identification of the producing organism.Gwynn MN, Box SJ, Brown AG, Gilpin MLJ Antibiot (Tokyo)10.7164/antibiotics.41.11988Monobactams/*biosynthesis, Pseudomonas/*isolation & purification/metabolismPhylogeny
21080961Methods for genetic manipulation of Burkholderia gladioli pathovar cocovenenans.Somprasong N, McMillan I, Karkhoff-Schweizer RR, Mongkolsuk S, Schweizer HPBMC Res Notes10.1186/1756-0500-3-3082010

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4294Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11318)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11318
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39056Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16506
44657Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 3374)https://www.ccug.se/strain?id=3374
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
71558Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID264242.1StrainInfo: A central database for resolving microbial strain identifiers
119635Curators of the CIPCollection of Institut Pasteur (CIP 104582)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104582