Pseudoflavonifractor capillosus (DSM 23940, ATCC 29799, CCUG 15402 A)

Name: Pseudoflavonifractor capillosus (DSM 23940, ATCC 29799, CCUG 15402 A)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 18083

Type strain

Culture col. no. DSM 23940 ATCC 29799 CCUG 15402 A VPI R2-29-1 KCTC 15156 2 more

NCBI tax ID(s) 411467 106588

Special Collections DSMZ CCUG JCM KCTC

History DSMZ <- CCUG <- ATCC <- E. P. Cato, Virginia Polytechnical Institute and State University, Blacksburg, V., USA; VPI R2-29-1 JCM <-- CCUG 15402 A <-- ATCC 29799 <-- E. P. Cato VPI R2-29-1. KCTC <- CCUG <- ATCC <- EP Cato, VPI R2-29-1

Links

Pseudoflavonifractor capillosus DSM 23940 is an anaerobe, rod-shaped bacterium that was isolated from human faeces.

rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 39725

KCTC 15156,ATCC 29799,CCUG 15402,CCUG 15402 A,DSM 23940

@ref 20215

Last LPSN update 2026-05-29 08:29:10

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Pseudoflavonifractor

Species Pseudoflavonifractor capillosus

Full scientific name Pseudoflavonifractor capillosus (Tissier 1908) Carlier et al. 2010

Synonyms (2)

Bacteroides capillosus
"Bacillus capillosus"

Morphology

Cell morphology

@ref	Cell shape	Gram stain
68367	rod-shaped		from API 20A
68367		negative	from API 20A
67771	rod-shaped
67771	curved-shaped
67771		negative

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
17449	gamma	0
46242			2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17449	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
17449	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17449	positive	growth	37
46242	positive	growth	37
67770	positive	growth	37
67771	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
17449	anaerobe
46242	anaerobe
67771	anaerobe
125438	anaerobe	92.612
125439	obligate anaerobe	99.609

Spore formation

@ref	Confidence
68367		from API 20A
67771
125439	95.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68367	17057 ChEBI	cellobiose	+	builds acid from	from API 20A
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	-	builds acid from	from API 20A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68367	16024 ChEBI	D-mannose	-	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	+	builds acid from	from API 20A
68367	4853 ChEBI	esculin	+	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	-	hydrolysis	from API 20A
68367	17754 ChEBI	glycerol	-	builds acid from	from API 20A
68367	30849 ChEBI	L-arabinose	-	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68367	62345 ChEBI	L-rhamnose	+	builds acid from	from API 20A
68367	17716 ChEBI	lactose	-	builds acid from	from API 20A
68367	17306 ChEBI	maltose	-	builds acid from	from API 20A
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68367	16634 ChEBI	raffinose	-	builds acid from	from API 20A
68367	17814 ChEBI	salicin	+	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	-	builds acid from	from API 20A
68367	17992 ChEBI	sucrose	-	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	+	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
68367	35581 ChEBI	indole		from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68367	beta-glucosidase	+	3.2.1.21	from API 20A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
17449	catalase	-	1.11.1.6
17449	cytochrome-c oxidase	-	1.9.3.1
68367	gelatinase	-		from API 20A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	palmitate biosynthesis	100	22 of 22
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	vitamin B12 metabolism	85.29	29 of 34
66794	pyrimidine metabolism	82.22	37 of 45
66794	purine metabolism	80.85	76 of 94
66794	glycogen metabolism	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	CMP-KDO biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	methionine metabolism	73.08	19 of 26
66794	vitamin B6 metabolism	72.73	8 of 11
66794	NAD metabolism	72.22	13 of 18
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	heme metabolism	71.43	10 of 14
66794	propionate fermentation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	cyanate degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	methane metabolism	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	oxidative phosphorylation	63.74	58 of 91
66794	d-xylose degradation	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	gluconeogenesis	62.5	5 of 8
66794	non-pathway related	60.53	23 of 38
66794	methylglyoxal degradation	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	propanol degradation	57.14	4 of 7
66794	citric acid cycle	57.14	8 of 14
66794	degradation of sugar acids	56	14 of 25
66794	degradation of hexoses	55.56	10 of 18
66794	cysteine metabolism	55.56	10 of 18
66794	histidine metabolism	55.17	16 of 29
66794	alanine metabolism	55.17	16 of 29
66794	lysine metabolism	54.76	23 of 42
66794	leucine metabolism	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	ethanol fermentation	50	1 of 2
66794	degradation of pentoses	50	14 of 28
66794	ketogluconate metabolism	50	4 of 8
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	adipate degradation	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	urea cycle	46.15	6 of 13
66794	vitamin B1 metabolism	46.15	6 of 13
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	d-mannose degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	tryptophan metabolism	42.11	16 of 38
66794	arginine metabolism	41.67	10 of 24
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	flavin biosynthesis	40	6 of 15
66794	glycine metabolism	40	4 of 10
66794	sulfate reduction	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	pentose phosphate pathway	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	lipid metabolism	32.26	10 of 31
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	glutathione metabolism	28.57	4 of 14
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	arachidonic acid metabolism	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
17449	-	-	+	-	-	-	-	+	+	-	-	+	-	+	-	-	-	-	+	+	not determinedn.d.	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
17449	-	-	-	+	-	+/-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species
17449	human faeces	Homo sapiens
46242	Human feces	Homo sapiens
67770	Human feces	Homo sapiens
67771	From human feces	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence AY136666 (>99% sequence identity) for Pseudoflavonifractor capillosus subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	154
Animal Samples	14487
Plant Samples	42
Total Samples	14741

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17449	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM16925v2 assembly for Pseudoflavonifractor capillosus ATCC 29799	contig	GCA_000169255	411467.62	640963014	411467	62.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17449	Bacteroides capillosus 16S ribosomal RNA gene, partial sequence	AY136666	1483		411467

GC content

@ref	GC-content (mol%)	Method
17449	60	high performance liquid chromatography (HPLC)
67771	60.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM16925v2 assembly for Pseudoflavonifractor capillosus ATCC 29799
BV-BRC: 411467.62

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	99.61	no
125439	motility	BacteriaNetⓘ	no	64.71	no
125439	gram_stain	BacteriaNetⓘ	negative	79.71	no
125439	spore_formation	BacteriaNetⓘ	no	95.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoflavonifractor capillosus ATCC 29799
PATRIC: 411467.62

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	59.51	yes
125438	anaerobic	anaerobicⓘ	yes	92.61	no
125438	spore-forming	spore-formingⓘ	no	58.37	no
125438	aerobic	aerobicⓘ	no	95.24	yes
125438	thermophilic	thermophileⓘ	no	91.39	yes
125438	flagellated	motile2+ⓘ	no	86.14	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Development of culture methods capable of culturing a wide range of predominant species of intestinal bacteria.	Hirano R, Nishita I, Nakai R, Bito A, Sasabe R, Kurihara S.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1056866	2023
Phylogeny	Noncontiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2^T , the second Intestinimonas species cultured from the human gut.	Afouda P, Durand GA, Lagier JC, Labas N, Cadoret F, Armstrong N, Raoult D, Dubourg G.	Microbiologyopen	10.1002/mbo3.621	2019
	Carotenoid productivity in human intestinal bacteria Eubacterium limosum and Leuconostoc mesenteroides with functional analysis of their carotenoid biosynthesis genes.	Matsumoto W, Takemura M, Nanaura H, Ami Y, Maoka T, Shindo K, Kurihara S, Misawa N.	Eng Microbiol	10.1016/j.engmic.2024.100147	2024
Metabolism	Determination of Butyrate Synthesis Capacity in Gut Microbiota: Quantification of but Gene Abundance by qPCR in Fecal Samples.	Daskova N, Heczkova M, Modos I, Videnska P, Splichalova P, Pelantova H, Kuzma M, Gojda J, Cahova M.	Biomolecules	10.3390/biom11091303	2021
Pathogenicity	Aberrant intestinal microbiota in individuals with prediabetes.	Allin KH, Tremaroli V, Caesar R, Jensen BAH, Damgaard MTF, Bahl MI, Licht TR, Hansen TH, Nielsen T, Dantoft TM, Linneberg A, Jorgensen T, Vestergaard H, Kristiansen K, Franks PW, IMI-DIRECT consortium, Hansen T, Backhed F, Pedersen O.	Diabetologia	10.1007/s00125-018-4550-1	2018
	Molecular-phylogenetic characterization of the microbiota in ulcerated and non-ulcerated regions in the patients with Crohn's disease.	Li Q, Wang C, Tang C, Li N, Li J.	PLoS One	10.1371/journal.pone.0034939	2012
Phylogeny	A primary assessment of the endophytic bacterial community in a xerophilous moss (Grimmia montana) using molecular method and cultivated isolates.	Liu XL, Liu SL, Liu M, Kong BH, Liu L, Li YH.	Braz J Microbiol	10.1590/s1517-83822014000100022	2014
Metabolism	A metagenomic beta-glucuronidase uncovers a core adaptive function of the human intestinal microbiome.	Gloux K, Berteau O, El Oumami H, Beguet F, Leclerc M, Dore J.	Proc Natl Acad Sci U S A	10.1073/pnas.1000066107	2011
Phylogeny	Phylogenetic distribution and membrane topology of the LytR-CpsA-Psr protein family.	Hubscher J, Luthy L, Berger-Bachi B, Stutzmann Meier P.	BMC Genomics	10.1186/1471-2164-9-617	2008
	Analysis of the mobilization functions of the vancomycin resistance transposon Tn1549, a member of a new family of conjugative elements.	Tsvetkova K, Marvaud JC, Lambert T.	J Bacteriol	10.1128/jb.00680-09	2010
Metabolism	Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification.	Haft DH, Basu MK.	J Bacteriol	10.1128/jb.00040-11	2011
Phylogeny	Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota.	Martinez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J.	Appl Environ Microbiol	10.1128/aem.00380-09	2009
Enzymology	Comparison of randomly cloned and whole genomic DNA probes for the detection of Porphyromonas gingivalis and Bacteroides forsythus.	Wong M, DiRienzo JM, Lai CH, Listgarten MA.	J Periodontal Res	10.1111/j.1600-0765.1996.tb00460.x	1996
	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jimenez-Garcia B, Moal IH, Fernandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ.	Proteins	10.1002/prot.25007	2016
	Biological diversity of prokaryotic type IV secretion systems.	Alvarez-Martinez CE, Christie PJ.	Microbiol Mol Biol Rev	10.1128/mmbr.00023-09	2009
	Deciphering the Interrelation of Gut Microbiota and BMI in Atherosclerosis: A Metagenomic Approach.	Palanisamy H, Vidyalakshmi S.	Can J Microbiol	10.1139/cjm-2025-0075	2025
	Role of gut microbiota and immune response in breast cancer progression.	Zhang X, Ma N, Jin C, Cao X.	Biomol Biomed	10.17305/bb.2025.12003	2025
Genetics	Causal relationships between gut microbiota and depression/anxiety disorders: A 2-sample Mendelian randomization study.	Fan T, Li L, Chen Y.	Medicine (Baltimore)	10.1097/md.0000000000039543	2024
Genetics	Gut microbiome and major depressive disorder: insights from two-sample Mendelian randomization.	Zhao Q, Baranova A, Cao H, Zhang F.	BMC Psychiatry	10.1186/s12888-024-05942-6	2024
	The effect of culturing temperature on the growth of the most dominant bacterial species of human gut microbiota and harmful bacterial species.	Shimokawa H, Sakakibara H, Ami Y, Hirano R, Kurihara S.	Biosci Microbiota Food Health	10.12938/bmfh.2024-087	2025
Pathogenicity	Escherichia coli is implicated in the development and manifestation of host susceptibility to the roundworm Trichostrongylus colubriformis infections in sheep.	Liu F, McNally J, Fleming DS, Ingham AB, Hunt PW, Li RW.	Vet Res	10.1186/s13567-025-01565-1	2025
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Metabolism	Novel Approaches in Glucose and Lipid Metabolism Disorder Therapy: Targeting the Gut Microbiota-Bile Acid Axis.	Jiang J, Zhang H, Hussain M, Abdullah, Feng F, Guan R, Zhong H.	Biology (Basel)	10.3390/biology14070802	2025
	MicroRNA-Enriched Plant-Derived Exosomes Alleviate Colitis by Modulating Systemic Immunity, Metabolic Homeostasis, and Gut Microbiota.	Shi R, Tan W, Jin H, Chan SI, Li W, Lei SS, Cui G, Wang Y, Yang DH, Zhong Z.	Adv Sci (Weinh)	10.1002/advs.202505921	2025
	Characterization of the gut microbiota and fecal and blood metabolomes under various factors in urban children from Northwest China.	Yang Y, Chen J, Gao H, Cui M, Zhu M, Xiang X, Wang Q.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1374544	2024
Metabolism	Early-life milk replacer feeding mediates lipid metabolism disorders induced by colonic microbiota and bile acid profiles to reduce body weight in goat model.	Zhang K, Zhang T, Guo M, Cuoji A, Xu Y, Zhao Y, Yang Y, Brugger D, Wang X, Suo L, Wu Y, Chen Y.	J Anim Sci Biotechnol	10.1186/s40104-024-01072-x	2024
	Environmental Impact on Differential Composition of Gut Microbiota in Indoor Chickens in Commercial Production and Outdoor, Backyard Chickens.	Seidlerova Z, Kubasova T, Faldynova M, Crhanova M, Karasova D, Babak V, Rychlik I.	Microorganisms	10.3390/microorganisms8050767	2020
	Commensal gut microbiota-derived acetate and propionate enhance heart adaptation in response to cardiac pressure overload in mice.	Lin CJ, Cheng YC, Chen HC, Chao YK, Nicholson MW, Yen ECL, Kamp TJ, Hsieh PCH.	Theranostics	10.7150/thno.76002	2022
Pathogenicity	Aging-Induced Dysbiosis of Gut Microbiota as a Risk Factor for Increased Listeria monocytogenes Infection.	Alam MS, Gangiredla J, Hasan NA, Barnaba T, Tartera C.	Front Immunol	10.3389/fimmu.2021.672353	2021
	Eggshell and Feed Microbiota Do Not Represent Major Sources of Gut Anaerobes for Chickens in Commercial Production.	Volf J, Crhanova M, Karasova D, Faldynova M, Kubasova T, Seidlerova Z, Sebkova A, Zeman M, Juricova H, Matiasovicova J, Foltyn M, Tvrdon Z, Rychlik I.	Microorganisms	10.3390/microorganisms9071480	2021
	Free-caged rearing modes regulate chicken intestinal metabolism by influencing gut microbial homeostasis.	Li T, Wang P, Zhi Z, Guo T, Zhou J, Zhang H, Cao C, Cai Y, Li Y, Zhang J.	Poult Sci	10.1016/j.psj.2024.104381	2025
	Visualizing the Growth and Division of Rat Gut Bacteria by D-Amino Acid-Based in vivo Labeling and FISH Staining.	Chen R, Song J, Lin L, Liu J, Yang C, Wang W.	Front Mol Biosci	10.3389/fmolb.2021.681938	2021
Pathogenicity	A comparison of the gut microbiome between long-term users and non-users of proton pump inhibitors.	Clooney AG, Bernstein CN, Leslie WD, Vagianos K, Sargent M, Laserna-Mendieta EJ, Claesson MJ, Targownik LE.	Aliment Pharmacol Ther	10.1111/apt.13568	2016
	Dietary butyrate ameliorates metabolic health associated with selective proliferation of gut Lachnospiraceae bacterium 28-4.	Li Z, Zhou E, Liu C, Wicks H, Yildiz S, Razack F, Ying Z, Kooijman S, Koonen DPY, Heijink M, Kostidis S, Giera M, Sanders IMJG, Kuijper EJ, Smits WK, van Dijk KW, Rensen PCN, Wang Y.	JCI Insight	10.1172/jci.insight.166655	2023
	Phenotypic and genotypic characterization of multidrug-resistant Bacteroides, Parabacteroides spp., and Pseudoflavonifractor from a Costa Rican hospital.	Molina J, Barrantes G, Quesada-Gomez C, Rodriguez C, Rodriguez-Cavallini E.	Microb Drug Resist	10.1089/mdr.2013.0180	2014
Genetics	Profiling of the intestinal community of Clostridia: taxonomy and evolutionary analysis.	Candeliere F, Musmeci E, Amaretti A, Sola L, Raimondi S, Rossi M.	Microbiome Res Rep	10.20517/mrr.2022.19	2023
	Association between gut microbiota and gastrointestinal cancer: a two-sample bi-directional Mendelian randomization study.	Su Q, Jin C, Bo Z, Yang Y, Wang J, Wang J, Zhou J, Chen Y, Zeng H, Chen G, Wang Y.	Front Microbiol	10.3389/fmicb.2023.1181328	2023
	Using whole-genome sequencing (WGS) to plot colorectal cancer-related gut microbiota in a population with varied geography.	Shuwen H, Yinhang W, Xingming Z, Jing Z, Jinxin L, Wei W, Kefeng D.	Gut Pathog	10.1186/s13099-022-00524-x	2022
Genetics	Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans.	Ganguli S, Rahaman S, Bera AR, Vishal V, Malik S, Roopalakshmi K, Singh PK.	Genom Data	10.1016/j.gdata.2017.09.001	2017
	Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions.	Gnanasekaran T, Sarathi A, Fang Q, Azarm A, Assis Geraldo J, Nigro E, Arumugam M.	mSystems	10.1128/msystems.01249-22	2023
	Maternal Magnolol Supplementation during Pregnancy and Lactation Promotes Antioxidant Capacity, Improves Gut Health, and Alters Gut Microbiota and Metabolites of Weanling Piglets.	Fan Q, Du E, Chen F, Tao W, Zhao N, Huang S, Guo W, Huang J, Wei J.	Metabolites	10.3390/metabo13070797	2023
Genetics	Involvement of Gut Microbiota in Schizophrenia and Treatment Resistance to Antipsychotics.	Manchia M, Fontana A, Panebianco C, Paribello P, Arzedi C, Cossu E, Garzilli M, Montis MA, Mura A, Pisanu C, Congiu D, Copetti M, Pinna F, Pazienza V, Squassina A, Carpiniello B.	Biomedicines	10.3390/biomedicines9080875	2021
	Exploring the Role of Gut Microbiota in Major Depressive Disorder and in Treatment Resistance to Antidepressants.	Fontana A, Manchia M, Panebianco C, Paribello P, Arzedi C, Cossu E, Garzilli M, Montis MA, Mura A, Pisanu C, Congiu D, Copetti M, Pinna F, Carpiniello B, Squassina A, Pazienza V.	Biomedicines	10.3390/biomedicines8090311	2020
Phylogeny	Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome.	Nagy-Szakal D, Williams BL, Mishra N, Che X, Lee B, Bateman L, Klimas NG, Komaroff AL, Levine S, Montoya JG, Peterson DL, Ramanan D, Jain K, Eddy ML, Hornig M, Lipkin WI.	Microbiome	10.1186/s40168-017-0261-y	2017
	Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria.	Zenner C, Hitch TCA, Riedel T, Wortmann E, Tiede S, Buhl EM, Abt B, Neuhaus K, Velge P, Overmann J, Kaspers B, Clavel T.	mSystems	10.1128/msystems.01300-20	2021
Pathogenicity	Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections.	Straub TJ, Chou WC, Manson AL, Schreiber HL, Walker BJ, Desjardins CA, Chapman SB, Kaspar KL, Kahsai OJ, Traylor E, Dodson KW, Hullar MAJ, Hultgren SJ, Khoo C, Earl AM.	BMC Microbiol	10.1186/s12866-021-02106-4	2021
Pathogenicity	Rumen and hindgut microbiome regulate average daily gain of preweaning Holstein heifer calves in different ways.	Xu SY, Feng XR, Zhao W, Bi YL, Diao QY, Tu Y.	Microbiome	10.1186/s40168-024-01844-7	2024
Enzymology	Bacteremia with Bacteroides pyogenes after a cat bite.	Madsen IR, Justesen US.	J Clin Microbiol	10.1128/jcm.00250-11	2011
	Evaluation of VITEK mass spectrometry (MS), a matrix-assisted laser desorption ionization time-of-flight MS system for identification of anaerobic bacteria.	Lee W, Kim M, Yong D, Jeong SH, Lee K, Chong Y.	Ann Lab Med	10.3343/alm.2015.35.1.69	2015
	Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos.	Mei Z, Chen GC, Wang Z, Usyk M, Yu B, Baeza YV, Humphrey G, Benitez RS, Li J, Williams-Nguyen JS, Daviglus ML, Hou L, Cai J, Zheng Y, Knight R, Burk RD, Boerwinkle E, Kaplan RC, Qi Q.	Am J Clin Nutr	10.1093/ajcn/nqab001	2021
	Effect of dietary supplementation with Lactobacillus acidophilus D2/CSL (CECT 4529) on caecum microbioma and productive performance in broiler chickens.	De Cesare A, Sirri F, Manfreda G, Moniaci P, Giardini A, Zampiga M, Meluzzi A.	PLoS One	10.1371/journal.pone.0176309	2017
	HiBC: a publicly available collection of bacterial strains isolated from the human gut.	Hitch TCA, Masson JM, Pauvert C, Bosch J, Nuchtern S, Treichel NS, Baloh M, Razavi S, Afrizal A, Kousetzi N, Aguirre AM, Wylensek D, Coates AC, Jennings SAV, Panyot A, Viehof A, Schmitz MA, Stuhrmann M, Deis EC, Bisdorf K, Chiotelli MD, Lissin A, Schober I, Witte J, Cramer T, Riedel T, Wende M, Winter KA, Amend L, Riva A, Trinh S, Mitchell L, Hartman J, Berry D, Seitz J, Bossert LC, Grognot M, Allers T, Strowig T, Pester M, Abt B, Reimer LC, Overmann J, Clavel T.	Nat Commun	10.1038/s41467-025-59229-9	2025
Genetics	Unveiling Candida albicans intestinal carriage in healthy volunteers: the role of micro- and mycobiota, diet, host genetics and immune response.	Delavy M, Sertour N, Patin E, Le Chatelier E, Cole N, Dubois F, Xie Z, Saint-Andre V, Manichanh C, Walker AW, Quintana-Murci L, Duffy D, d'Enfert C, Bougnoux ME, Consortium MI.	Gut Microbes	10.1080/19490976.2023.2287618	2023
Metabolism	Phylogenetic evidence for lateral gene transfer in the intestine of marine iguanas.	Nelson DM, Cann IK, Altermann E, Mackie RI.	PLoS One	10.1371/journal.pone.0010785	2010
	Spatial Variation of the Gut Microbiota in Broiler Chickens as Affected by Dietary Available Phosphorus and Assessed by T-RFLP Analysis and 454 Pyrosequencing.	Witzig M, Carminha-Silva A, Green-Engert R, Hoelzle K, Zeller E, Seifert J, Hoelzle LE, Rodehutscord M.	PLoS One	10.1371/journal.pone.0143442	2015
Metabolism	Transverse aortic constriction induces gut barrier alterations, microbiota remodeling and systemic inflammation.	Boccella N, Paolillo R, Coretti L, D'Apice S, Lama A, Giugliano G, Schiattarella GG, Cuomo M, d'Aquino I, Cavaliere G, Paciello O, Mollica MP, Mattace Raso G, Esposito G, Lembo F, Perrino C.	Sci Rep	10.1038/s41598-021-86651-y	2021
	The gut microbiota in multiple sclerosis varies with disease activity.	Thirion F, Sellebjerg F, Fan Y, Lyu L, Hansen TH, Pons N, Levenez F, Quinquis B, Stankevic E, Sondergaard HB, Dantoft TM, Poulsen CS, Forslund SK, Vestergaard H, Hansen T, Brix S, Oturai A, Sorensen PS, Ehrlich SD, Pedersen O.	Genome Med	10.1186/s13073-022-01148-1	2023
	Gut microbiota from coronary artery disease patients contributes to vascular dysfunction in mice by regulating bile acid metabolism and immune activation.	Liu H, Tian R, Wang H, Feng S, Li H, Xiao Y, Luan X, Zhang Z, Shi N, Niu H, Zhang S.	J Transl Med	10.1186/s12967-020-02539-x	2020
	Metagenomic Analysis Reveals New Microbiota Related to Fiber Digestion in Pigs.	Liu G, Li P, Hou L, Niu Q, Pu G, Wang B, Du T, Kim SW, Niu P, Li Q, Huang R.	Front Microbiol	10.3389/fmicb.2021.746717	2021
	Nurmi-type Culture Prepared using Culture Media without l-Cysteine Enhances Salmonella Exclusion in Hatched Layer Chicks.	Shimura Y, Shoji N, Tanikawa T, Obayashi T, Honda J, Tanaka M, Sasaki Y, Fukushima J, Inamoto T.	J Poult Sci	10.2141/jpsa.0150101	2016
	An Attenuated Salmonella enterica Serovar Typhimurium Strain and Galacto-Oligosaccharides Accelerate Clearance of Salmonella Infections in Poultry through Modifications to the Gut Microbiome.	Azcarate-Peril MA, Butz N, Cadenas MB, Koci M, Ballou A, Mendoza M, Ali R, Hassan H.	Appl Environ Microbiol	10.1128/aem.02526-17	2018
Genetics	Taxonogenomic description of four new Clostridium species isolated from human gut: 'Clostridium amazonitimonense', 'Clostridium merdae', 'Clostridium massilidielmoense' and 'Clostridium nigeriense'.	Alou MT, Ndongo S, Fregere L, Labas N, Andrieu C, Richez M, Couderc C, Baudoin JP, Abrahao J, Brah S, Diallo A, Sokhna C, Cassir N, La Scola B, Cadoret F, Raoult D.	New Microbes New Infect	10.1016/j.nmni.2017.11.003	2018
	Candida expansion in the gut of lung cancer patients associates with an ecological signature that supports growth under dysbiotic conditions.	Seelbinder B, Lohinai Z, Vazquez-Uribe R, Brunke S, Chen X, Mirhakkak M, Lopez-Escalera S, Dome B, Megyesfalvi Z, Berta J, Galffy G, Dulka E, Wellejus A, Weiss GJ, Bauer M, Hube B, Sommer MOA, Panagiotou G.	Nat Commun	10.1038/s41467-023-38058-8	2023
Pathogenicity	The human microbiota: novel targets for hospital-acquired infections and antibiotic resistance.	Pettigrew MM, Johnson JK, Harris AD.	Ann Epidemiol	10.1016/j.annepidem.2016.02.007	2016
Phylogeny	Four cases of bacteremia caused by Oscillibacter ruminantium, a newly described species.	Sydenham TV, Arpi M, Klein K, Justesen US.	J Clin Microbiol	10.1128/jcm.03128-13	2014
	The Composition and Metabolic Potential of the Human Small Intestinal Microbiota Within the Context of Inflammatory Bowel Disease.	Ruigrok RAAA, Collij V, Sureda P, Klaassen MAY, Bolte LA, Jansen BH, Voskuil MD, Fu J, Wijmenga C, Zhernakova A, Weersma RK, Vich Vila A.	J Crohns Colitis	10.1093/ecco-jcc/jjab020	2021
Phylogeny	Butyrate production in phylogenetically diverse Firmicutes isolated from the chicken caecum.	Eeckhaut V, Van Immerseel F, Croubels S, De Baere S, Haesebrouck F, Ducatelle R, Louis P, Vandamme P.	Microb Biotechnol	10.1111/j.1751-7915.2010.00244.x	2011
	Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?	Bergk Pinto B, Maccario L, Dommergue A, Vogel TM, Larose C.	Front Microbiol	10.3389/fmicb.2019.02492	2019
	Next-generation prebiotic promotes selective growth of bifidobacteria, suppressing Clostridioides difficile.	Hirano R, Sakanaka M, Yoshimi K, Sugimoto N, Eguchi S, Yamauchi Y, Nara M, Maeda S, Ami Y, Gotoh A, Katayama T, Iida N, Kato T, Ohno H, Fukiya S, Yokota A, Nishimoto M, Kitaoka M, Nakai H, Kurihara S.	Gut Microbes	10.1080/19490976.2021.1973835	2021
Metabolism	Ketogenic diet and ketone bodies enhance the anticancer effects of PD-1 blockade.	Ferrere G, Tidjani Alou M, Liu P, Goubet AG, Fidelle M, Kepp O, Durand S, Iebba V, Fluckiger A, Daillere R, Thelemaque C, Grajeda-Iglesias C, Alves Costa Silva C, Aprahamian F, Lefevre D, Zhao L, Ryffel B, Colomba E, Arnedos M, Drubay D, Rauber C, Raoult D, Asnicar F, Spector T, Segata N, Derosa L, Kroemer G, Zitvogel L.	JCI Insight	10.1172/jci.insight.145207	2021
	Characterization of intestinal microbiota in alcoholic patients with and without alcoholic hepatitis or chronic alcoholic pancreatitis.	Ciocan D, Rebours V, Voican CS, Wrzosek L, Puchois V, Cassard AM, Perlemuter G.	Sci Rep	10.1038/s41598-018-23146-3	2018
Genetics	CD44 deletion leading to attenuation of experimental autoimmune encephalomyelitis results from alterations in gut microbiome in mice.	Chitrala KN, Guan H, Singh NP, Busbee B, Gandy A, Mehrpouya-Bahrami P, Ganewatta MS, Tang C, Chatterjee S, Nagarkatti P, Nagarkatti M.	Eur J Immunol	10.1002/eji.201646792	2017
Transcriptome	The Oral Mouse Microbiome Promotes Tumorigenesis in Oral Squamous Cell Carcinoma.	Stashenko P, Yost S, Choi Y, Danciu T, Chen T, Yoganathan S, Kressirer C, Ruiz-Tourrella M, Das B, Kokaras A, Frias-Lopez J.	mSystems	10.1128/msystems.00323-19	2019
	BaiCD gene cluster abundance is negatively correlated with Clostridium difficile infection.	Solbach P, Chhatwal P, Woltemate S, Tacconelli E, Buhl M, Gerhard M, Thoeringer CK, Vehreschild MJGT, Jazmati N, Rupp J, Manns MP, Bachmann O, Suerbaum S.	PLoS One	10.1371/journal.pone.0196977	2018
	Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of bacteria.	Hitch TCA, Riedel T, Oren A, Overmann J, Lawley TD, Clavel T.	ISME Commun	10.1038/s43705-021-00017-z	2021
Metabolism	Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile.	Buffie CG, Bucci V, Stein RR, McKenney PT, Ling L, Gobourne A, No D, Liu H, Kinnebrew M, Viale A, Littmann E, van den Brink MR, Jenq RR, Taur Y, Sander C, Cross JR, Toussaint NC, Xavier JB, Pamer EG.	Nature	10.1038/nature13828	2015
Phylogeny	Influence of wet distillers grains diets on beef cattle fecal bacterial community structure.	Rice WC, Galyean ML, Cox SB, Dowd SE, Cole NA.	BMC Microbiol	10.1186/1471-2180-12-25	2012
Phylogeny	Proposal to unify Clostridium orbiscindens Winter et al. 1991 and Eubacterium plautii (Seguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov.	Carlier JP, Bedora-Faure M, K'ouas G, Alauzet C, Mory F	Int J Syst Evol Microbiol	10.1099/ijs.0.016725-0	2009
Genetics	Description of Clostridium phoceensis sp. nov., a new species within the genus Clostridium.	Hosny M, Benamar S, Durand G, Armstrong N, Michelle C, Cadoret F, La Scola B, Cassir N.	New Microbes New Infect	10.1016/j.nmni.2016.09.008	2016
Genetics	Massilioclostridium coli gen. nov., sp. nov., a new member of the Clostridiaceae family isolated from the left colon of a 27-year-old woman.	Lo CI, Mailhe M, Ricaboni D, Vitton V, Benezech A, Michelle C, Armstrong N, Bittar F, Fournier PE, Raoult D, Lagier JC.	New Microbes New Infect	10.1016/j.nmni.2017.01.004	2017
Phylogeny	Intestinimonas butyriciproducens gen. nov., sp. nov., a butyrate-producing bacterium from the mouse intestine.	Klaring K, Hanske L, Bui N, Charrier C, Blaut M, Haller D, Plugge CM, Clavel T.	Int J Syst Evol Microbiol	10.1099/ijs.0.051441-0	2013
Phylogeny	Lawsonibacter asaccharolyticus gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces.	Sakamoto M, Iino T, Yuki M, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002800	2018

References

#17449	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23940
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#46242	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15402 A
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudoflavonifractor capillosus (DSM 23940, ATCC 29799, CCUG 15402 A)

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