Name: Flavonifractor plautii 265
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18082

Type strain:

Species: Flavonifractor plautii

Strain Designation: 265

Culture col. no.: DSM 6740, ATCC 49531

Strain history: <- V. Bokkenheuser, 265

NCBI tax ID(s): 649753 (strain), 292800 (species)

SI-ID 42536

ATCC 49531, DSM 6740, VTT E-042449, DSM 6749

Other strains from Flavonifractor plautii

F. plautii S1, DSM 4000, ATCC 29863, CCUG ... (type strain)
F. plautii YL31, DSM 26117
F. plautii mOs-SRB-10A-2011, DSM 29137
F. plautii WHC-424-CC-2, DSM 29136
F. plautii CCUG 39730
F. plautii CCUG 55143
F. plautii CCUG 70556
F. plautii H5_55, DSM 108238
F. plautii Cla-CZ-140, DSM 109053

Section

Flavonifractor plautii 265 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human faeces.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Flavonifractor*
	Species	**Flavonifractor plautii**
	Full Scientific Name (LPSN)	Flavonifractor plautii (Séguin 1928) Carlier et al. 2010

	Synonym	Fusobacterium plautii
	Synonym	Fusobacterium plauti
	Synonym	Clostridium orbiscindens
	Synonym	Eubacterium plautii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2796]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #2796]

Culture medium growth

[Ref.: #2796]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2796]

Culture medium composition

expand / minimize

[Ref.: #2796]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #2796]

Culture medium growth

[Ref.: #2796]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2796]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2796]			growth	37 °C

[Ref.: #2796]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2796]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.669

[Ref.: #69481]	Ability of spore formation	no Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.455

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #2796]	13420	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	+/-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2796]	Sample type/isolated from	human faeces
[Ref.: #2796]	Country	USA
[Ref.: #2796]	Country ISO 3 Code	USA
[Ref.: #2796]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y18187 (>99% sequence identity) for Flavonifractor plautii subclade from Microbeatlas

Aquatic Samples	3332
Soil Samples	1740
Animal Samples	266872
Plant Samples	646
Total Samples	272590

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2796]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2796]	Clostridium orbiscindens 16S rRNA gene, partial, strain DSM 6740	Y18187	1550	ENA	649753 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavonifractor plautii DSM 6740	GCA_004345805	scaffold	GenBank	649753 tax ID	*
[Ref.: #66792]	Flavonifractor plautii DSM 6740	649753.4	wgs	PATRIC	649753 tax ID	*
[Ref.: #66792]	Flavonifractor plautii DSM 6740	2795385455	draft	JGI IMG/M	649753 tax ID	*

[Ref.: #2796]

GC-content

56 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavonifractor plautii DSM 6740 DSM 6740 NCBI: GCA_004345805.1
[Ref.: #69481]	spore-forming	no	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavonifractor plautii DSM 6740 DSM 6740 NCBI: GCA_004345805.1
[Ref.: #69480]	motile	yes	76.905	no
[Ref.: #69480]	flagellated	no	77.405	no
[Ref.: #69480]	gram-positive	no	51.266	no
[Ref.: #69480]	anaerobic	yes	99.517	yes
[Ref.: #69480]	aerobic	no	98.522	yes
[Ref.: #69480]	halophile	no	93.873	no
[Ref.: #69480]	spore-forming	yes	56.832	no
[Ref.: #69480]	glucose-util	yes	86.399	no
[Ref.: #69480]	thermophile	no	96.208	yes
[Ref.: #69480]	glucose-ferment	yes	61.569	no

Availability in culture collections External links

[Ref.: #2796]

Culture collection no.

DSM 6740, ATCC 49531

[Ref.: #87070]

SI-ID 42536

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Isolation of catechin-converting human intestinal bacteria.	Kutschera M, Engst W, Blaut M, Braune A	J Appl Microbiol	10.1111/j.1365-2672.2011.05025.x	2011	*
Phylogeny	Oscillibacter valericigenes gen. nov., sp. nov., a valerate-producing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam.	Iino T, Mori K, Tanaka K, Suzuki KI, Harayama S	Int J Syst Evol Microbiol	10.1099/ijs.0.64717-0	2007	*
Enzymology	Discovery of an ene-reductase for initiating flavone and flavonol catabolism in gut bacteria.	Yang G, Hong S, Yang P, Sun Y, Wang Y, Zhang P, Jiang W, Gu Y	Nat Commun	10.1038/s41467-021-20974-2	2021	*
Phylogeny	Clostridium orbiscindens sp. nov., a human intestinal bacterium capable of cleaving the flavonoid C-ring.	Winter J, Popoff MR, Grimont P, Bokkenheuser VD	Int J Syst Bacteriol	10.1099/00207713-41-3-355	1991	*
Metabolism	Bioconversion of (-)-epicatechin, (+)-epicatechin, (-)-catechin, and (+)-catechin by (-)-epigallocatechin-metabolizing bacteria.	Takagaki A, Nanjo F	Biol Pharm Bull	10.1248/bpb.b14-00813	2015	*
Phylogeny	Isolation and characterization of rat intestinal bacteria involved in biotransformation of (-)-epigallocatechin.	Takagaki A, Kato Y, Nanjo F	Arch Microbiol	10.1007/s00203-014-1006-y	2014	*
Phylogeny	Proposal to unify Clostridium orbiscindens Winter et al. 1991 and Eubacterium plautii (Seguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov.	Carlier JP, Bedora-Faure M, K'ouas G, Alauzet C, Mory F	Int J Syst Evol Microbiol	10.1099/ijs.0.016725-0	2009	*

References

#2796

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6740

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87070

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42536.1 )

* These data were automatically processed and therefore are not curated

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Flavonifractor plautii DSM 6740 DSM 6740

Flavonifractor plautii DSM 6740 DSM 6740

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