Name: Caldicellulosiruptor sp. Wai35.B1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18030

Type strain:

Species: Caldicellulosiruptor sp.

Strain Designation: Wai35.B1

Culture col. no.: DSM 8977

Strain history: <- F. A. Rainey, University of Queensland, Department of Microbiology, Brisbane, Australia; Wai35.B1

NCBI tax ID(s): 1981791 (species)

SI-ID 48553

DSM 8977

Special Collections

DSMZ

Other strains from Caldicellulosiruptor sp.

Section

Caldicellulosiruptor sp. Wai35.B1 is an anaerobe bacterium that was isolated from hot spring.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Caldicellulosiruptor*
	Full Scientific Name (LPSN)	Caldicellulosiruptor Rainey et al. 1995

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3449]

Culture medium

CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640)

[Ref.: #3449]

Culture medium growth

[Ref.: #3449]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3449]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3449]			growth	65 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3449]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %96.254

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3449]	Sample type/isolated from	hot spring
[Ref.: #3449]	Geographic location (country and/or sea, region)	Waimangu
[Ref.: #3449]	Country	New Zealand
[Ref.: #3449]	Country ISO 3 Code	NZL
[Ref.: #3449]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence L09182 (>99% sequence identity) for Caldicellulosiruptor from Microbeatlas

Aquatic Samples	3
Soil Samples	3
Animal Samples
Plant Samples
Total Samples	6

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3449]	Gram-positive bacterial sp. (strain Wai35 B1) 16S ribosomal RNA (16S rRNA) gene	L09182	1527	GenBank ENA	1387557 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldicellulosiruptor sp. Wai35.B1	1387557.3	complete	PATRIC	1387557 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor danielii Wai35.B1, DSM 8977	2558860987	draft	JGI IMG/M	1387557 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldicellulosiruptor sp. Wai35.B1 PATRIC: 1387557.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	70.109	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	96.254	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	54.799	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.352	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	83.769	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	72.5	no

Availability in culture collections External links

[Ref.: #3449]

Culture collection no.

DSM 8977

[Ref.: #87019]

SI-ID 48553

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses.	Lee LL, Blumer-Schuette SE, Izquierdo JA, Zurawski JV, Loder AJ, Conway JM, Elkins JG, Podar M, Clum A, Jones PC, Piatek MJ, Weighill DA, Jacobson DA, Adams MWW, Kelly RM	Appl Environ Microbiol	10.1128/AEM.02694-17	2018	*
Genetics	Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus".	Lee LL, Izquierdo JA, Blumer-Schuette SE, Zurawski JV, Conway JM, Cottingham RW, Huntemann M, Copeland A, Chen IM, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Shapiro N, Nordberg HP, Cantor MN, Hua SX, Woyke T, Kelly RM	Genome Announc	10.1128/genomeA.00440-15	2015	*

References

#3449

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8977

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87019

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48553.1 )

* These data were automatically processed and therefore are not curated

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