Name: Caldicellulosiruptor kronotskyensis 2002
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18029

Type strain:

Species: Caldicellulosiruptor kronotskyensis

Strain Designation: 2002

Culture col. no.: DSM 18902, VKM B-2412

Strain history: <- M.L. Miroshnichenko; 2002

NCBI tax ID(s): 632348 (strain), 413889 (species)

SI-ID 398224

DSM 18902

Special Collections

Section

Caldicellulosiruptor kronotskyensis 2002 is an anaerobe, chemoorganoheterotroph, Gram-positive bacterium that was isolated from terrestrial neutral geothermal spring.

Gram-positive
motile
rod-shaped
anaerobe
chemoorganoheterotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Caldicellulosiruptor*
	Species	**Caldicellulosiruptor kronotskyensis**
	Full Scientific Name (LPSN)	Caldicellulosiruptor kronotskyensis Miroshnichenko et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32271]	Gram stain	positive
[Ref.: #28511]	Gram stain	positive

[Ref.: #32271]	Cell length	3.1 µm
[Ref.: #28511]	Cell length	3-3.2 µm

[Ref.: #32271]	Cell width	0.6 µm
[Ref.: #28511]	Cell width	0.5-0.7 µm

[Ref.: #32271]	Cell shape	rod-shaped
[Ref.: #28511]	Cell shape	rod-shaped

[Ref.: #32271]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7611]

Culture medium

THERMOANAEROBACTER (BA) MEDIUM (DSMZ Medium 671)

[Ref.: #7611]

Culture medium growth

[Ref.: #7611]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7611]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7611]	growth	70 °C
[Ref.: #28511]	optimum	70 °C
[Ref.: #28511]	growth	45-82 °C
[Ref.: #32271]	growth	45-82 °C
[Ref.: #32271]	optimum	70 °C

		pH
[Ref.: #32271]	optimum	7
[Ref.: #28511]	optimum	7
[Ref.: #32271]	growth	06-08
[Ref.: #28511]	growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7611]	Oxygen tolerance	anaerobe
[Ref.: #32271]	Oxygen tolerance	anaerobe
[Ref.: #28511]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.439

[Ref.: #28511]

Nutrition type

chemoorganoheterotroph

[Ref.: #32271]	Ability of spore formation	no
[Ref.: #28511]	Ability of spore formation	no

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32271]	arabinose ChEBI	+	carbon source
[Ref.: #28511]	arabinose ChEBI	+	assimilation
[Ref.: #28511]	carboxymethylcellulose ChEBI	+	assimilation
[Ref.: #32271]	cellobiose ChEBI	+	carbon source
[Ref.: #28511]	cellobiose ChEBI	+	assimilation
[Ref.: #28511]	cellulose ChEBI	+	assimilation
[Ref.: #28511]	chitin ChEBI	-	growth
[Ref.: #28511]	dextran ChEBI	+	assimilation
[Ref.: #32271]	fructose ChEBI	+	carbon source
[Ref.: #28511]	fructose ChEBI	+	assimilation
[Ref.: #32271]	galactose ChEBI	+	carbon source
[Ref.: #28511]	galactose ChEBI	+	assimilation
[Ref.: #32271]	glucose ChEBI	+	carbon source
[Ref.: #28511]	glucose ChEBI	+	assimilation
[Ref.: #32271]	lactose ChEBI	+	carbon source
[Ref.: #28511]	lactose ChEBI	+	assimilation
[Ref.: #32271]	maltose ChEBI	+	carbon source
[Ref.: #28511]	maltose ChEBI	+	assimilation
[Ref.: #32271]	mannitol ChEBI	+	carbon source
[Ref.: #28511]	mannitol ChEBI	+	assimilation
[Ref.: #28511]	pectin ChEBI	+	assimilation
[Ref.: #28511]	peptone	+	assimilation
[Ref.: #28511]	pyruvate ChEBI	-	growth
[Ref.: #28511]	raffinose ChEBI	-	growth
[Ref.: #28511]	ribose ChEBI	-	growth
[Ref.: #28511]	starch ChEBI	+	assimilation
[Ref.: #32271]	sucrose ChEBI	+	carbon source
[Ref.: #28511]	sucrose ChEBI	+	assimilation
[Ref.: #32271]	trehalose ChEBI	+	carbon source
[Ref.: #28511]	trehalose ChEBI	+	assimilation
[Ref.: #28511]	xylan ChEBI	+	assimilation
[Ref.: #32271]	xylose ChEBI	+	carbon source
[Ref.: #28511]	xylose ChEBI	+	assimilation
[Ref.: #28511]	yeast extract (0.01 %, w/v)	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #28511]		acetate ChEBI	yes
[Ref.: #28511]		lactate ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7611]	Sample type/isolated from	terrestrial neutral geothermal spring
[Ref.: #7611]	Geographic location (country and/or sea, region)	Kamchatka, Geyser Valley
[Ref.: #7611]	Country	Russia
[Ref.: #7611]	Country ISO 3 Code	RUS
[Ref.: #7611]	Continent	Asia

[Ref.: #28511]	Sample type/isolated from	geothermal spring in geyser valley
[Ref.: #28511]	Geographic location (country and/or sea, region)	Kamchatka
[Ref.: #28511]	Country	Russia
[Ref.: #28511]	Country ISO 3 Code	RUS
[Ref.: #28511]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF100909 (>99% sequence identity) for Caldicellulosiruptor kronotskyensis subclade from Microbeatlas

Aquatic Samples	15
Soil Samples
Animal Samples	3
Plant Samples	1
Total Samples	19

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7611]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7611]	Caldicellulosiruptor kronotskiensis strain 2002 16S ribosomal RNA gene, partial sequence	EF100909	1505	GenBank ENA	413889 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldicellulosiruptor kronotskyensis 2002	GCA_000166775	complete	GenBank ENA	632348 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor kronotskyensis 2002	632348.3	complete	PATRIC	632348 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor kronotskyensis 2002	649633024	complete	JGI IMG/M	632348 tax ID	*

[Ref.: #7611]

GC-content

35.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldicellulosiruptor kronotskyensis 2002 2002 NCBI: GCA_000166775.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	74.006	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	97.439	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.523	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	63.737	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	84.702	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	72.35	no

Availability in culture collections External links

[Ref.: #7611]

Culture collection no.

DSM 18902, VKM B-2412

[Ref.: #87018]

SI-ID 398224

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two extremely thermophilic, cellulolytic, anaerobic bacteria from Kamchatka thermal springs.	Miroshnichenko ML, Kublanov IV, Kostrikina NA, Tourova TP, Kolganova TV, Birkeland NK, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/ijs.0.65236-0	2008	*

References

#7611

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18902

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28511

IJSEM 1492 2008 ( DOI 10.1099/ijs.0.65236-0 , PubMed 18523201 )

#32271

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28511 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87018

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398224.1 )

#28511

IJSEM 1492 2008 ( DOI 10.1099/ijs.0.65236-0 , PubMed 18523201 )

* These data were automatically processed and therefore are not curated

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Caldicellulosiruptor kronotskyensis 2002 2002

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