Name: Caldicellulosiruptor hydrothermalis 108
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18028

Type strain:

Species: Caldicellulosiruptor hydrothermalis

Strain Designation: 108

Culture col. no.: DSM 18901, VKM B-2411

Strain history: <- M.L. Miroshnichenko; 108

NCBI tax ID(s): 632292 (strain), 413888 (species)

SI-ID 397718

DSM 18901

Section

Caldicellulosiruptor hydrothermalis 108 is an anaerobe, chemoorganoheterotroph, thermophilic bacterium that was isolated from terrestrial neutral geothermal spring.

Gram-positive
motile
rod-shaped
anaerobe
chemoorganoheterotroph
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Caldicellulosiruptor*
	Species	**Caldicellulosiruptor hydrothermalis**
	Full Scientific Name (LPSN)	Caldicellulosiruptor hydrothermalis Miroshnichenko et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32271]	Gram stain	positive
[Ref.: #28511]	Gram stain	positive

[Ref.: #32271]	Cell length	3.1 µm
[Ref.: #28511]	Cell length	3-3.2 µm

[Ref.: #32271]	Cell width	0.6 µm
[Ref.: #28511]	Cell width	0.5-0.7 µm

[Ref.: #32271]	Cell shape	rod-shaped
[Ref.: #28511]	Cell shape	rod-shaped

[Ref.: #32271]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7610]

Culture medium

THERMOANAEROBACTER (BA) MEDIUM (DSMZ Medium 671)

[Ref.: #7610]

Culture medium growth

[Ref.: #7610]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7610]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7610]	growth	65 °C
[Ref.: #28511]	optimum	65 °C
[Ref.: #28511]	growth	50-80 °C
[Ref.: #32271]	growth	50-80 °C
[Ref.: #32271]	optimum	65 °C

[Ref.: #7610]	Temperature range	thermophilic
[Ref.: #28511]	Temperature range	thermophilic
[Ref.: #28511]	Temperature range	hyperthermophilic
[Ref.: #32271]	Temperature range	hyperthermophilic
[Ref.: #32271]	Temperature range	thermophilic

		pH
[Ref.: #32271]	optimum	7
[Ref.: #28511]	optimum	7
[Ref.: #32271]	growth	06-08
[Ref.: #28511]	growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7610]	Oxygen tolerance	anaerobe
[Ref.: #32271]	Oxygen tolerance	anaerobe
[Ref.: #28511]	Oxygen tolerance	anaerobe

[Ref.: #28511]

Nutrition type

chemoorganoheterotroph

[Ref.: #32271]	Ability of spore formation	no
[Ref.: #28511]	Ability of spore formation	no

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32271]	arabinose ChEBI	+	carbon source
[Ref.: #28511]	arabinose ChEBI	+	assimilation
[Ref.: #28511]	carboxymethylcellulose ChEBI	+	assimilation
[Ref.: #32271]	cellobiose ChEBI	+	carbon source
[Ref.: #28511]	cellobiose ChEBI	+	assimilation
[Ref.: #28511]	cellulose ChEBI	+	assimilation
[Ref.: #28511]	cellulose ChEBI	+	degradation
[Ref.: #28511]	chitin ChEBI	-	growth
[Ref.: #28511]	dextran ChEBI	+	assimilation
[Ref.: #32271]	fructose ChEBI	+	carbon source
[Ref.: #28511]	fructose ChEBI	+	assimilation
[Ref.: #32271]	galactose ChEBI	+	carbon source
[Ref.: #28511]	galactose ChEBI	+	assimilation
[Ref.: #32271]	glucose ChEBI	+	carbon source
[Ref.: #28511]	glucose ChEBI	+	assimilation
[Ref.: #32271]	lactose ChEBI	+	carbon source
[Ref.: #28511]	lactose ChEBI	+	assimilation
[Ref.: #32271]	maltose ChEBI	+	carbon source
[Ref.: #28511]	maltose ChEBI	+	assimilation
[Ref.: #32271]	mannitol ChEBI	+	carbon source
[Ref.: #28511]	mannitol ChEBI	+	assimilation
[Ref.: #28511]	pectin ChEBI	+	assimilation
[Ref.: #28511]	peptone	-	growth
[Ref.: #28511]	pyruvate ChEBI	-	growth
[Ref.: #28511]	raffinose ChEBI	-	growth
[Ref.: #28511]	ribose ChEBI	-	growth
[Ref.: #28511]	starch ChEBI	+	assimilation
[Ref.: #32271]	sucrose ChEBI	+	carbon source
[Ref.: #28511]	sucrose ChEBI	+	assimilation
[Ref.: #28511]	trehalose ChEBI	-	growth
[Ref.: #28511]	xylan ChEBI	+	assimilation
[Ref.: #32271]	xylose ChEBI	+	carbon source
[Ref.: #28511]	xylose ChEBI	+	assimilation
[Ref.: #28511]	yeast extract	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #28511]		acetate ChEBI	yes
[Ref.: #28511]		lactate ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7610]	Sample type/isolated from	terrestrial neutral geothermal spring
[Ref.: #7610]	Geographic location (country and/or sea, region)	Kamchatka
[Ref.: #7610]	Country	Russia
[Ref.: #7610]	Country ISO 3 Code	RUS
[Ref.: #7610]	Continent	Asia

[Ref.: #28511]	Sample type/isolated from	neutral geothermal spring
[Ref.: #28511]	Geographic location (country and/or sea, region)	Kamchatka
[Ref.: #28511]	Country	Russia
[Ref.: #28511]	Country ISO 3 Code	RUS
[Ref.: #28511]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF100908 (>99% sequence identity) for Caldicellulosiruptor hydrothermalis subclade from Microbeatlas

Aquatic Samples	10
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	11

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7610]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7610]	Caldicellulosiruptor hydrothermalis strain 108 16S ribosomal RNA gene, partial sequence	EF100908	1482	ENA	632292 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldicellulosiruptor hydrothermalis 108	GCA_000166355	complete	GenBank	632292 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor hydrothermalis 108	632292.3	complete	PATRIC	632292 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor hydrothermalis 108	649633022	complete	JGI IMG/M	632292 tax ID	*

[Ref.: #7610]

GC-content

36.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldicellulosiruptor hydrothermalis 108 108 NCBI: GCA_000166355.1
[Ref.: #69480]	motile	yes	87.778	yes
[Ref.: #69480]	flagellated	no	82.718	no
[Ref.: #69480]	gram-positive	yes	85.078	yes
[Ref.: #69480]	anaerobic	yes	99.499	no
[Ref.: #69480]	aerobic	no	98.554	yes
[Ref.: #69480]	halophile	no	97.601	no
[Ref.: #69480]	spore-forming	no	69.215	yes
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-util	yes	88.873	no
[Ref.: #69480]	glucose-ferment	no	51.767	no

Availability in culture collections External links

[Ref.: #7610]

Culture collection no.

DSM 18901, VKM B-2411

[Ref.: #87017]

SI-ID 397718

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two extremely thermophilic, cellulolytic, anaerobic bacteria from Kamchatka thermal springs.	Miroshnichenko ML, Kublanov IV, Kostrikina NA, Tourova TP, Kolganova TV, Birkeland NK, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/ijs.0.65236-0	2008	*

References

#7610

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18901

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28511

IJSEM 1492 2008 ( DOI 10.1099/ijs.0.65236-0 , PubMed 18523201 )

#32271

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28511 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87017

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397718.1 )

#28511

IJSEM 1492 2008 ( DOI 10.1099/ijs.0.65236-0 , PubMed 18523201 )

* These data were automatically processed and therefore are not curated

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