Name: Caldicellulosiruptor sp. Rt8.B8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18031

Type strain:

Species: Caldicellulosiruptor sp.

Strain Designation: Rt8.B8

Culture col. no.: DSM 8990

Strain history: <- F. A. Rainey; Rt8.B8 <- H. W. Morgan

NCBI tax ID(s): 1981791 (species)

SI-ID 48557

DSM 8990

Special Collections

DSMZ

Other strains from Caldicellulosiruptor sp.

Section

Caldicellulosiruptor sp. Rt8.B8 is an anaerobe bacterium that was isolated from hot spring.

anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Caldicellulosiruptor*
	Full Scientific Name (LPSN)	Caldicellulosiruptor Rainey et al. 1995

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3454]

Culture medium

CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640)

[Ref.: #3454]

Culture medium growth

[Ref.: #3454]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3454]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3454]			growth	65 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3454]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %96.961

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3454]	Sample type/isolated from	hot spring
[Ref.: #3454]	Geographic location (country and/or sea, region)	Rotorua
[Ref.: #3454]	Country	New Zealand
[Ref.: #3454]	Country ISO 3 Code	NZL
[Ref.: #3454]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldicellulosiruptor sp. Rt8.B8	1387555.3	wgs	PATRIC	1387555 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor morganii Rt8.B8, DSM 8990	2558860144	draft	JGI IMG/M	1387555 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor morganii DSM 8990	GCA_026810225	complete	GenBank ENA	1387555 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldicellulosiruptor morganii DSM 8990 NCBI: GCA_026810225.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	71.845	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	96.961	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.927	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	59.789	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	85.161	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	73.708	no

Availability in culture collections External links

[Ref.: #3454]

Culture collection no.

DSM 8990

[Ref.: #87020]

SI-ID 48557

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Identification of a thermostable cellobiose 2-epimerase from Caldicellulosiruptor sp. Rt8.B8 and production of epilactose using Bacillus subtilis.	Liangfei L, Yafeng Z, Kai X, Zheng X	J Sci Food Agric	10.1002/jsfa.11333	2021	*
Genetics	Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses.	Lee LL, Blumer-Schuette SE, Izquierdo JA, Zurawski JV, Loder AJ, Conway JM, Elkins JG, Podar M, Clum A, Jones PC, Piatek MJ, Weighill DA, Jacobson DA, Adams MWW, Kelly RM	Appl Environ Microbiol	10.1128/AEM.02694-17	2018	*
Genetics	Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus".	Lee LL, Izquierdo JA, Blumer-Schuette SE, Zurawski JV, Conway JM, Cottingham RW, Huntemann M, Copeland A, Chen IM, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Shapiro N, Nordberg HP, Cantor MN, Hua SX, Woyke T, Kelly RM	Genome Announc	10.1128/genomeA.00440-15	2015	*

References

#3454

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8990

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87020

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48557.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Caldicellulosiruptor sp. in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Caldicellulosiruptor morganii DSM 8990

Change proposal

Change proposal