Name: Georgenia soli CC-NMPT-T3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1776

Type strain:

Species: Georgenia soli

Strain Designation: CC-NMPT-T3

Culture col. no.: DSM 21838, CCM 7658, NBRC 107791, CCUG 57735, JCM 17968

Strain history: CCM 7658 <-- P. Kämpfer CC-NMPT-T3.

NCBI tax ID(s): 638953 (species)

SI-ID 411819

CCUG 57735

Section

Georgenia soli CC-NMPT-T3 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from iron-ore-contaminated soil.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Bogoriellaceae*
	Genus	*Georgenia*
	Species	**Georgenia soli**
	Full Scientific Name (LPSN)	Georgenia soli Kämpfer et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29525]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29525]	Cell width	1.25 µm

[Ref.: #29525]	Cell shape	coccus-shaped

[Ref.: #21362]	Colony color	Lemon yellow (1012)
[Ref.: #21362]	Incubation period	10-14 days
[Ref.: #21362]	Cultivation medium used	ISP 2

[Ref.: #21362]	Colony color	Ivory (1014)
[Ref.: #21362]	Incubation period	10-14 days
[Ref.: #21362]	Cultivation medium used	ISP 5

[Ref.: #21362]	Colony color	Ivory (1014)
[Ref.: #21362]	Incubation period	10-14 days
[Ref.: #21362]	Cultivation medium used	ISP 7

[Ref.: #21362]	Colony color	Ivory (1014)
[Ref.: #21362]	Incubation period	10-14 days
[Ref.: #21362]	Cultivation medium used	suter with tyrosine

[Ref.: #21362]	Colony color	Green beige (1000)
[Ref.: #21362]	Incubation period	10-14 days
[Ref.: #21362]	Cultivation medium used	suter without tyrosine

[Ref.: #21362]	Incubation period	10-14 days
[Ref.: #21362]	Cultivation medium used	ISP 3

[Ref.: #21362]	Incubation period	10-14 days
[Ref.: #21362]	Cultivation medium used	ISP 4

[Ref.: #61433]	Incubation period	2 days

[Ref.: #21362]	Multicellular complex forming ability	no
[Ref.: #21362]	Medium Name (multicellularity)	ISP 2

[Ref.: #21362]	Multicellular complex forming ability	no
[Ref.: #21362]	Medium Name (multicellularity)	ISP 3

[Ref.: #21362]	Multicellular complex forming ability	no
[Ref.: #21362]	Medium Name (multicellularity)	ISP 4

[Ref.: #21362]	Multicellular complex forming ability	no
[Ref.: #21362]	Medium Name (multicellularity)	ISP 5

[Ref.: #21362]	Multicellular complex forming ability	no
[Ref.: #21362]	Medium Name (multicellularity)	ISP 7

[Ref.: #21362]	Multicellular complex forming ability	no
[Ref.: #21362]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21362]	Multicellular complex forming ability	no
[Ref.: #21362]	Medium Name (multicellularity)	Suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21362]

Culture medium

ISP 2

[Ref.: #21362]

Culture medium growth

[Ref.: #21362]

Culture medium composition

expand / minimize

[Ref.: #21362]

Culture medium

ISP 5

[Ref.: #21362]

Culture medium growth

[Ref.: #21362]

Culture medium composition

expand / minimize

[Ref.: #21362]

Culture medium

ISP 7

[Ref.: #21362]

Culture medium growth

[Ref.: #21362]

Culture medium composition

expand / minimize

[Ref.: #21362]

Culture medium

suter with tyrosine

[Ref.: #21362]

Culture medium growth

[Ref.: #21362]

Culture medium composition

expand / minimize

[Ref.: #21362]

Culture medium

suter without tyrosine

[Ref.: #21362]

Culture medium growth

[Ref.: #21362]

Culture medium composition

expand / minimize

[Ref.: #21362]

Culture medium

ISP 4

[Ref.: #21362]

Culture medium growth

[Ref.: #21362]

Culture medium composition

expand / minimize

[Ref.: #21362]

Culture medium

ISP 3

[Ref.: #21362]

Culture medium growth

[Ref.: #21362]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #29525]	growth	25-30 °C
[Ref.: #61433]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #29525]	Temperature range	mesophilic
[Ref.: #61433]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29525]	Oxygen tolerance	aerobe
[Ref.: #61433]	Oxygen tolerance	aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.894

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #21362]		NaCl		maximum	7.5	%

[Ref.: #15981]	Murein short key	A11.54
[Ref.: #15981]	Murein types	A4alpha L-Lys-L-Glu

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21362]	arabinose ChEBI	-
[Ref.: #21362]	cellulose ChEBI	+
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21362]	fructose ChEBI	-
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21362]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #21362]	mannose ChEBI	-
[Ref.: #21362]	myo-inositol ChEBI	-
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #21362]	raffinose ChEBI	-
[Ref.: #21362]	rhamnose ChEBI	-
[Ref.: #29525]	ribose ChEBI	+	carbon source
[Ref.: #29525]	salicin ChEBI	+	carbon source
[Ref.: #21362]	sucrose ChEBI	-
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #21362]	xylose ChEBI	-
[Ref.: #29525]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #29525]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29525]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21362]	491	+	+	-	-	-	-	-	-	+	+/-	+	not determinedn.d.	+	+	+/-	-	+	+	+	+	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21362]	1003	not determinedn.d.	+	+	+	-	+	+	-	-	-	+	+	-	+	+	+	-	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	ketogluconate metabolism	100	8 of 8
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	flavin biosynthesis	93.33	14 of 15
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	metabolism of disaccharids	81.82	9 of 11
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	coenzyme A metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	oxidative phosphorylation	61.54	56 of 91
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	chlorophyll metabolism	33.33	6 of 18
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	glycine metabolism	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15981]	Sample type/isolated from	iron-ore-contaminated soil
[Ref.: #15981]	Geographic location (country and/or sea, region)	Karnataka, New Mangalore Port
[Ref.: #15981]	Country	India
[Ref.: #15981]	Country ISO 3 Code	IND
[Ref.: #15981]	Continent	Asia

[Ref.: #61433]	Sample type/isolated from	Soil,ore contaminated
[Ref.: #61433]	Geographic location (country and/or sea, region)	Karnataka,near New Mangalore Port
[Ref.: #61433]	Country	India
[Ref.: #61433]	Country ISO 3 Code	IND
[Ref.: #61433]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Iron-ore-contaminated soil near New Mangalore Port
[Ref.: #67770]	Geographic location (country and/or sea, region)	Karnataka
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN356976 (>99% sequence identity) for Georgenia soli from Microbeatlas

Aquatic Samples	70
Soil Samples	625
Animal Samples	112
Plant Samples	55
Total Samples	862

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15981]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15981]	Georgenia soli partial 16S rRNA gene, type strain CC-NMPT-T3T	FN356976	1483	ENA	638953 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Georgenia soli DSM 21838	GCA_002563695	contig	GenBank	638953 tax ID
[Ref.: #66792]	Georgenia soli strain DSM 21838	638953.3	wgs	PATRIC	638953 tax ID	*
[Ref.: #66792]	Georgenia soli DSM 21838	2627854285	draft	JGI IMG/M	638953 tax ID	*

[Ref.: #67770]

GC-content

72.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Georgenia soli strain DSM 21838 PATRIC: 638953.3
[Ref.: #69481]	spore-forming	no	87	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Georgenia soli strain DSM 21838 PATRIC: 638953.3
[Ref.: #69480]	gram-positive	yes	90.06	yes
[Ref.: #69480]	anaerobic	no	98.695	yes
[Ref.: #69480]	halophile	no	77.145	no
[Ref.: #69480]	spore-forming	no	92.293	no
[Ref.: #69480]	glucose-util	yes	89.245	yes
[Ref.: #69480]	thermophile	no	98.143	yes
[Ref.: #69480]	flagellated	no	97.886	no
[Ref.: #69480]	aerobic	yes	88.5	yes
[Ref.: #69480]	motile	no	81.7	no
[Ref.: #69480]	glucose-ferment	no	84.649	no

Availability in culture collections External links

[Ref.: #15981]

Culture collection no.

DSM 21838, CCM 7658, NBRC 107791, CCUG 57735, JCM 17968

[Ref.: #71423]

SI-ID 411819

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Georgenia subflava sp. nov., isolated from a deep-sea sediment.	Wang S, Xu X, Wang L, Jiao K, Zhang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000553	2015	*
Phylogeny	Georgenia daeguensis sp. nov., isolated from 4-chlorophenol enrichment culture.	Woo SG, Cui Y, Kang MS, Jin L, Kim KK, Lee ST, Lee M, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.033217-0	2011	*
Phylogeny	Georgenia soli sp. nov., isolated from iron-ore-contaminated soil in India.	Kampfer P, Arun AB, Busse HJ, Langer S, Young CC, Chen WM, Schumann P, Syed AA, Rekha PD	Int J Syst Evol Microbiol	10.1099/ijs.0.014902-0	2009	*

References

#15981

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21838

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21362

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29525

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25922 (see below)

#61433 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57735

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71423

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411819.1 )

#25922

IJSEM 1027 2010 ( DOI 10.1099/ijs.0.014902-0 , PubMed 19666812 )

* These data were automatically processed and therefore are not curated

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Georgenia soli strain DSM 21838

Georgenia soli strain DSM 21838

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