Name: Georgenia halophila DSM 21365
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1775

Type strain:

Species: Georgenia halophila

Culture col. no.: DSM 21365, CCTCC AB 208144, JCM 17810, YIM 93316, NBRC 107839

Strain history: DSM 21365 <-- S.-K. Tang YIM 93316.

NCBI tax ID(s): 620889 (species)

SI-ID 406410

DSM 21365

Special Collections

Section

Georgenia halophila DSM 21365 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that was isolated from soil from a salt lake.

Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Bogoriellaceae*
	Genus	*Georgenia*
	Species	**Georgenia halophila**
	Full Scientific Name (LPSN)	Georgenia halophila Tang et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29528]	Gram stain	positive

[Ref.: #29528]	Cell width	0.35 µm

[Ref.: #29528]	Cell shape	rod-shaped

[Ref.: #29528]	Motility	no

[Ref.: #29528]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15528]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15528]

Culture medium growth

[Ref.: #15528]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15528]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15528]	growth	28 °C
[Ref.: #29528]	growth	10-45 °C
[Ref.: #29528]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #29528]			optimum	7.5
[Ref.: #29528]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29528]

Oxygen tolerance

facultative anaerobe

[Ref.: #29528]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29528]		NaCl		growth	01-15	%
[Ref.: #29528]		NaCl		optimum	7.5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29528]	arabinose ChEBI	+	carbon source
[Ref.: #29528]	esculin ChEBI	+	hydrolysis
[Ref.: #29528]	fucose ChEBI	+	carbon source
[Ref.: #29528]	galactose ChEBI	+	carbon source
[Ref.: #29528]	glucose ChEBI	+	carbon source
[Ref.: #29528]	glycerol ChEBI	+	carbon source
[Ref.: #29528]	mannose ChEBI	+	carbon source
[Ref.: #29528]	nitrate ChEBI	+	reduction
[Ref.: #29528]	rhamnose ChEBI	+	carbon source
[Ref.: #29528]	ribose ChEBI	+	carbon source
[Ref.: #29528]	salicin ChEBI	+	carbon source
[Ref.: #29528]	sucrose ChEBI	+	carbon source
[Ref.: #29528]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29528]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29528]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29528]	catalase	+	1.11.1.6
[Ref.: #29528]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15528]	Sample type/isolated from	soil from a salt lake
[Ref.: #15528]	Geographic location (country and/or sea, region)	Xinjiang province, Qijiaojing Lake (43°23'01'' N 91°36'11'' E)
[Ref.: #15528]	Country	China
[Ref.: #15528]	Country ISO 3 Code	CHN
[Ref.: #15528]	Continent	Asia
[Ref.: #15528]	Geographic location	43.3836°/91.6031°

[Ref.: #67770]	Sample type/isolated from	Salt lake sample from Qijiaojing Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang Province, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ717681 (>99% sequence identity) for Georgenia halophila subclade from Microbeatlas

Aquatic Samples	31
Soil Samples	173
Animal Samples	90
Plant Samples	25
Total Samples	319

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15528]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15528]	Georgenia halophila strain YIM 93316 16S ribosomal RNA gene, partial sequence	FJ717681	1480	GenBank ENA	620889 tax ID

[Ref.: #15528]	GC-content	70.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29528]	GC-content	70.1 mol%

Availability in culture collections External links

[Ref.: #15528]

Culture collection no.

DSM 21365, CCTCC AB 208144, JCM 17810, YIM 93316, NBRC 107839

[Ref.: #71422]

SI-ID 406410

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Georgenia alba sp. nov., a novel halotolerant actinobacterium isolated from a desert sand sample.	Li LY, Yang ZW, Asem MD, Salam N, Xiao M, Alkhalifah DHM, Hozzein WN, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-1145-2	2018	*
Phylogeny	Georgenia deserti sp. nov., a halotolerant actinobacterium isolated from a desert sample.	Hozzein WN, Yang ZW, Alharbi SA, Alsakkaf WAA, Asem MD, Xiao M, Salam N, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002640	2018	*
Phylogeny	Georgenia daeguensis sp. nov., isolated from 4-chlorophenol enrichment culture.	Woo SG, Cui Y, Kang MS, Jin L, Kim KK, Lee ST, Lee M, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.033217-0	2011	*
Phylogeny	Georgenia halophila sp. nov., a halophilic actinobacterium isolated from a salt lake.	Tang SK, Wang Y, Lee JC, Lou K, Park DJ, Kim CJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.014993-0	2009	*

References

#15528

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21365

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29528

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25925 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71422

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406410.1 )

#25925

IJSEM 1317 2010 ( DOI 10.1099/ijs.0.014993-0 , PubMed 19667374 )

* These data were automatically processed and therefore are not curated

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