Name: Algoriphagus boritolerans T22
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17702

Type strain:

Species: Algoriphagus boritolerans

Strain Designation: T22

Culture col. no.: DSM 17298, ATCC BAA-1189, NBRC 101277, JCM 18970

Strain history: I. Ahmed T-22.

NCBI tax ID(s): 1120964 (strain), 308111 (species)

SI-ID 298266

ATCC BAA-1189, NBRC 101277, DSM 17298

Special Collections

Section

Algoriphagus boritolerans T22 is a Gram-negative, rod-shaped bacterium that was isolated from soil that naturally contains boron.

Gram-negative
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus boritolerans**
	Full Scientific Name (LPSN)	Algoriphagus boritolerans (Ahmed et al. 2007) Nedashkovskaya et al. 2007

Synonym

Chimaereicella boritolerans

Information on morphological and physiological properties Morphology

[Ref.: #31966]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.989

[Ref.: #31966]	Cell length	2.3 µm

[Ref.: #31966]	Cell width	0.35 µm

[Ref.: #31966]	Cell shape	rod-shaped

[Ref.: #31966]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #31966]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6881]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6881]

Culture medium growth

[Ref.: #6881]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6881]

Culture medium composition

expand / minimize

[Ref.: #6881]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #6881]

Culture medium growth

[Ref.: #6881]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6881]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6881]	growth	28 °C
[Ref.: #31966]	growth	16-37 °C
[Ref.: #31966]	optimum	29 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31966]			optimum	8.5
[Ref.: #31966]			growth	6.5-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31966]		NaCl		growth	0-3	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31966]	cellobiose ChEBI	+	carbon source
[Ref.: #31966]	esculin ChEBI	+	hydrolysis
[Ref.: #31966]	fucose ChEBI	+	carbon source
[Ref.: #31966]	glucose ChEBI	+	carbon source
[Ref.: #31966]	glycogen ChEBI	+	carbon source
[Ref.: #31966]	lactose ChEBI	+	carbon source
[Ref.: #31966]	maltose ChEBI	+	carbon source
[Ref.: #31966]	mannitol ChEBI	+	carbon source
[Ref.: #31966]	mannose ChEBI	+	carbon source
[Ref.: #31966]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31966]	raffinose ChEBI	+	carbon source
[Ref.: #31966]	rhamnose ChEBI	+	carbon source
[Ref.: #31966]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31966]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31966]	catalase	+	1.11.1.6
[Ref.: #31966]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6881]	Sample type/isolated from	soil that naturally contains boron
[Ref.: #6881]	Geographic location (country and/or sea, region)	Kutahya Province, Hisarcik area
[Ref.: #6881]	Country	Turkey
[Ref.: #6881]	Country ISO 3 Code	TUR
[Ref.: #6881]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Naturally boron containing soil of Hisarcik area
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kutahya Province
[Ref.: #67770]	Country	Turkey
[Ref.: #67770]	Country ISO 3 Code	TUR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681436 (>99% sequence identity) for Algoriphagus boritolerans subclade from Microbeatlas

Aquatic Samples	178
Soil Samples	20
Animal Samples	16
Plant Samples
Total Samples	214

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6881]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6881]	Chimaereicella boritolerans gene for 16S ribosomal RNA, partial sequence	AB197852	1489	GenBank ENA	308111 tax ID
[Ref.: #20218]	Algoriphagus boritolerans gene for 16S rRNA, partial sequence, strain: NBRC 101277	AB681436	1448	GenBank ENA	308111 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algoriphagus boritolerans DSM 17298 = JCM 18970	GCA_001313265	contig	GenBank ENA	1120964 tax ID
[Ref.: #67770]	Algoriphagus boritolerans DSM 17298 = JCM 18970	GCA_900108085	scaffold	GenBank ENA	1120964 tax ID
[Ref.: #66792]	Algoriphagus boritolerans DSM 17298 = JCM 18970	1120964.11	wgs	PATRIC	1120964 tax ID	*
[Ref.: #66792]	Algoriphagus boritolerans DSM 17298 = JCM 18970	1120964.3	wgs	PATRIC	1120964 tax ID	*
[Ref.: #66792]	Algoriphagus boritolerans JCM 18970	2734481938	draft	JGI IMG/M	1120964 tax ID	*
[Ref.: #66792]	Algoriphagus boritolerans DSM 17298	2599185235	draft	JGI IMG/M	1120964 tax ID	*

[Ref.: #6881]	GC-content	42.5 mol%
[Ref.: #67770]	GC-content	42.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus boritolerans DSM 17298 = JCM 18970 DSM 17298 NCBI: GCA_900108085.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus boritolerans DSM 17298 = JCM 18970 PATRIC: 1120964.11
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.989	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.698	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.313	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.363	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #6881]

Culture collection no.

DSM 17298, ATCC BAA-1189, NBRC 101277, JCM 18970

[Ref.: #86693]

SI-ID 298266

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus litoralis sp. nov., isolated from the junction between the ocean and a freshwater lake.	Wei Y, Mao H, Wang K, Yao H, Zhang Y, Cao J, Xie Z, Fang J	Antonie Van Leeuwenhoek	10.1007/s10482-019-01280-w	2019	*
Phylogeny	Chimaereicella boritolerans sp. nov., a boron-tolerant and alkaliphilic bacterium of the family Flavobacteriaceae isolated from soil.	Ahmed I, Yokota A, Fujiwara T	Int J Syst Evol Microbiol	10.1099/ijs.0.64728-0	2007	*

References

#6881

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17298

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31966

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28221 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86693

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298266.1 )

#28221

IJSEM 986 2007 ( DOI 10.1099/ijs.0.64728-0 , PubMed 17473246 )

* These data were automatically processed and therefore are not curated

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Algoriphagus boritolerans DSM 17298 = JCM 18970 DSM 17298

Algoriphagus boritolerans DSM 17298 = JCM 18970

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