Strain identifier

BacDive ID: 17702

Type strain: Yes

Species: Algoriphagus boritolerans

Strain Designation: T22

Strain history: I. Ahmed T-22.

NCBI tax ID(s): 1120964 (strain), 308111 (species)

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General

@ref: 6881

BacDive-ID: 17702

DSM-Number: 17298

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, rod-shaped

description: Algoriphagus boritolerans T22 is a Gram-negative, rod-shaped bacterium that was isolated from soil that naturally contains boron.

NCBI tax id

NCBI tax idMatching level
1120964strain
308111species

strain history

@refhistory
6881<- I. Ahmed, Biotechnol. Res. Centre, Univ. Tokyo, Japan; T22
67770I. Ahmed T-22.

doi: 10.13145/bacdive17702.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Algoriphagus
  • species: Algoriphagus boritolerans
  • full scientific name: Algoriphagus boritolerans (Ahmed et al. 2007) Nedashkovskaya et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Chimaereicella boritolerans

@ref: 6881

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Algoriphagus

species: Algoriphagus boritolerans

full scientific name: Algoriphagus boritolerans (Ahmed et al. 2007) Nedashkovskaya et al. 2007

strain designation: T22

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31966negative2.3 µm0.35 µmrod-shapedno
69480no91
69480negative96.989

pigmentation

  • @ref: 31966
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6881BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
6881LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381; with strain-specific modifications) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Boric acid 6.1833 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
6881positivegrowth28
31966positivegrowth16-37
31966positiveoptimum29
67770positivegrowth30

culture pH

@refabilitytypepHPH range
31966positivegrowth6.5-10.0alkaliphile
31966positiveoptimum8.5

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

halophily

  • @ref: 31966
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3196617057cellobiose+carbon source
3196633984fucose+carbon source
3196617234glucose+carbon source
3196628087glycogen+carbon source
3196617716lactose+carbon source
3196617306maltose+carbon source
3196629864mannitol+carbon source
3196637684mannose+carbon source
31966506227N-acetylglucosamine+carbon source
3196616634raffinose+carbon source
3196626546rhamnose+carbon source
3196617151xylitol+carbon source
319664853esculin+hydrolysis

enzymes

@refvalueactivityec
31966alkaline phosphatase+3.1.3.1
31966catalase+1.11.1.6
31966cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6881soil that naturally contains boronKutahya Province, Hisarcik areaTurkeyTURAsia
67770Naturally boron containing soil of Hisarcik areaKutahya ProvinceTurkeyTURAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_72444.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15774;96_1239;97_11178;98_50761;99_72444&stattab=map
  • Last taxonomy: Algoriphagus boritolerans subclade
  • 16S sequence: AB681436
  • Sequence Identity:
  • Total samples: 214
  • soil counts: 20
  • aquatic counts: 178
  • animal counts: 16

Safety information

risk assessment

  • @ref: 6881
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Algoriphagus boritolerans gene for 16S rRNA, partial sequence, strain: NBRC 101277AB6814361448nuccore308111
6881Chimaereicella boritolerans gene for 16S ribosomal RNA, partial sequenceAB1978521489nuccore308111

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Algoriphagus boritolerans DSM 17298 = JCM 189701120964.11wgspatric1120964
66792Algoriphagus boritolerans DSM 17298 = JCM 189701120964.3wgspatric1120964
66792Algoriphagus boritolerans JCM 189702734481938draftimg1120964
66792Algoriphagus boritolerans DSM 172982599185235draftimg1120964
67770Algoriphagus boritolerans DSM 17298 = JCM 18970GCA_001313265contigncbi1120964
67770Algoriphagus boritolerans DSM 17298 = JCM 18970GCA_900108085scaffoldncbi1120964

GC content

@refGC-contentmethod
688142.5
6777042.5high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno96.989yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.698no
69480spore-formingspore-formingAbility to form endo- or exosporesno86no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes86.313no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno97.363yes
69480flagellatedmotile2+Ability to perform flagellated movementno91no

External links

@ref: 6881

culture collection no.: DSM 17298, ATCC BAA-1189, NBRC 101277, JCM 18970

straininfo link

  • @ref: 86693
  • straininfo: 298266

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17473246Chimaereicella boritolerans sp. nov., a boron-tolerant and alkaliphilic bacterium of the family Flavobacteriaceae isolated from soil.Ahmed I, Yokota A, Fujiwara TInt J Syst Evol Microbiol10.1099/ijs.0.64728-02007Anti-Bacterial Agents/*pharmacology, Bacterial Typing Techniques, Base Composition, Boron/*pharmacology, Catalase/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/chemistry/*classification/drug effects/*isolation & purification/physiology, Genes, rRNA/genetics, Hydrogen-Ion Concentration, Locomotion, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/analysis, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/pharmacology, *Soil Microbiology, Temperature, TurkeyEnzymology
Phylogeny31114973Algoriphagus litoralis sp. nov., isolated from the junction between the ocean and a freshwater lake.Wei Y, Mao H, Wang K, Yao H, Zhang Y, Cao J, Xie Z, Fang JAntonie Van Leeuwenhoek10.1007/s10482-019-01280-w2019Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Hydrogen-Ion Concentration, Lakes, Locomotion, Nucleic Acid Hybridization, Oceans and Seas, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
6881Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17298)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17298
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
31966Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604128221
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86693Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID298266.1StrainInfo: A central database for resolving microbial strain identifiers