Name: Algoriphagus winogradskyi M-2Alg 14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17701

Type strain:

Species: Algoriphagus winogradskyi

Strain Designation: M-2Alg 14

Culture col. no.: DSM 15360, CCUG 47094, KMM 3956, LMG 21969, CIP 108557, JCM 13505

Strain history: CIP <- 2004, CCUG <- 2002, KMM

NCBI tax ID(s): 237017 (species)

SI-ID 93521

LMG 21969, CCUG 47094, DSM 15360, CIP 108557, JCM 13505

Section

Algoriphagus winogradskyi M-2Alg 14 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from green alga Acrosiphonia sonderi.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus winogradskyi**
	Full Scientific Name (LPSN)	Algoriphagus winogradskyi Nedashkovskaya et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30078]	Gram stain	negative
[Ref.: #123950]	Gram stain	negative

[Ref.: #30078]	Cell length	6 µm

[Ref.: #30078]	Cell width	0.6 µm

[Ref.: #30078]	Cell shape	rod-shaped
[Ref.: #123950]	Cell shape	rod-shaped

[Ref.: #30078]	Motility	no
[Ref.: #123950]	Motility	no

[Ref.: #30078]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5874]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5874]

Culture medium growth

[Ref.: #5874]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5874]

Culture medium composition

expand / minimize

[Ref.: #40017]

Culture medium

Marine agar (MA)

[Ref.: #40017]

Culture medium growth

[Ref.: #40017]

Culture medium composition

expand / minimize

[Ref.: #123950]

Culture medium

CIP Medium 13

[Ref.: #123950]

Culture medium growth

[Ref.: #123950]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5874]		growth	25 °C
[Ref.: #30078]		growth	04-39 °C
[Ref.: #30078]		optimum	25-28 °C
[Ref.: #40017]		growth	25 °C
[Ref.: #57505]		growth	25-28 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #123950]		growth	5-37 °C
[Ref.: #123950]	no	growth	41 °C
[Ref.: #123950]	no	growth	45 °C

[Ref.: #5874]	Temperature range	mesophilic
[Ref.: #30078]	Temperature range	mesophilic
[Ref.: #40017]	Temperature range	mesophilic
[Ref.: #57505]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123950]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30078]	Oxygen tolerance	aerobe
[Ref.: #57505]	Oxygen tolerance	aerobe
[Ref.: #123950]	Oxygen tolerance	obligate aerobe

[Ref.: #30078]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #30078]	NaCl		growth	0-6	%
[Ref.: #30078]	NaCl		optimum	3	%
[Ref.: #123950]	NaCl		growth	2-10	%
[Ref.: #123950]	NaCl	no	growth	0	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30078]	arabinose ChEBI	+	carbon source
[Ref.: #30078]	cellobiose ChEBI	+	carbon source
[Ref.: #30078]	esculin ChEBI	+	hydrolysis
[Ref.: #123950]	esculin ChEBI	+	hydrolysis
[Ref.: #30078]	galactose ChEBI	+	carbon source
[Ref.: #30078]	gelatin ChEBI	+	carbon source
[Ref.: #30078]	glucose ChEBI	+	carbon source
[Ref.: #123950]	hippurate ChEBI	+	hydrolysis
[Ref.: #30078]	lactose ChEBI	+	carbon source
[Ref.: #123950]	malonate ChEBI	-	assimilation
[Ref.: #30078]	maltose ChEBI	+	carbon source
[Ref.: #30078]	mannose ChEBI	+	carbon source
[Ref.: #30078]	melibiose ChEBI	+	carbon source
[Ref.: #30078]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30078]	nitrate ChEBI	+	reduction
[Ref.: #123950]	nitrate ChEBI	+	reduction
[Ref.: #123950]	nitrate ChEBI	-	respiration
[Ref.: #123950]	nitrite ChEBI	-	reduction
[Ref.: #30078]	raffinose ChEBI	+	carbon source
[Ref.: #30078]	rhamnose ChEBI	+	carbon source
[Ref.: #30078]	sucrose ChEBI	+	carbon source
[Ref.: #30078]	tween 20 ChEBI	+	carbon source
[Ref.: #30078]	tween 40 ChEBI	+	carbon source
[Ref.: #30078]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123950]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #123950]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #123950]		acetoin ChEBI	-
[Ref.: #123950]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123950]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #30078]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #123950]	amylase	+
[Ref.: #123950]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123950]	caseinase	+	3.4.21.50
[Ref.: #30078]	catalase	+	1.11.1.6
[Ref.: #123950]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #30078]	cytochrome oxidase	+	1.9.3.1
[Ref.: #123950]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123950]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123950]	gelatinase	+/-
[Ref.: #123950]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123950]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123950]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123950]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123950]	oxidase	+
[Ref.: #123950]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123950]	tryptophan deaminase	-
[Ref.: #123950]	tween esterase	+
[Ref.: #123950]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123950]	2803	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	+	+	+	+	-	+	+	-	-	+	-	+	+	+	+	+	-	+	-	+	-	+	+	-	+	-	+	+	+	-	+	-	+	+	+	-	-	+	+	+	-	+	+	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	+	+	+	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123950]	11281	-	+	+	+	-	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5874]	Sample type/isolated from	green alga Acrosiphonia sonderi
[Ref.: #5874]	Host species	Acrosiphonia sonderi
[Ref.: #5874]	Geographic location (country and/or sea, region)	Gulf of Peter the Great, Sea of Japan
[Ref.: #5874]	Continent	Asia

[Ref.: #57505]	Sample type/isolated from	Green alga,Acrosiphonia sonderi
[Ref.: #57505]	Sampling date	2000-06-01
[Ref.: #57505]	Geographic location (country and/or sea, region)	Sea of Japan
[Ref.: #57505]	Country	Pacific Ocean

[Ref.: #67770]	Sample type/isolated from	Green alga Acrosiphonia sonderi
[Ref.: #67770]	Host species	Acrosiphonia sonderi
[Ref.: #67770]	Geographic location (country and/or sea, region)	Troitsa Bay, Gulf of Peter the Great, the Sea of Japan

[Ref.: #123950]	Sample type/isolated from	Green alga, Acrosiphonia sonderi
[Ref.: #123950]	Geographic location (country and/or sea, region)	Pacific Ocean
[Ref.: #123950]	Country	Sea of Japan
[Ref.: #123950]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Host	#Algae	#Green algae
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ575263 (>99% sequence identity) for Algoriphagus from Microbeatlas

Aquatic Samples	307
Soil Samples	18
Animal Samples	38
Plant Samples	5
Total Samples	368

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5874]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123950]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5874]	Rhodovirga winogradskii 16S rRNA gene, strain LMG 21969	AJ575263	1473	ENA	237017 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algoriphagus winogradskyi DSM 15360	2724679815	draft	JGI IMG/M	237017 tax ID	*

[Ref.: #5874]	GC-content	39.1 mol%
[Ref.: #30078]	GC-content	39-42 mol%
[Ref.: #67770]	GC-content	39 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	42 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #5874]

Culture collection no.

DSM 15360, CCUG 47094, KMM 3956, LMG 21969, CIP 108557, JCM 13505

[Ref.: #86692]

SI-ID 93521

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004.	Nedashkovskaya OI, Vancanneyt M, Van Trappen S, Vandemeulebroecke K, Lysenko AM, Rohde M, Falsen E, Frolova GM, Mikhailov VV, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.02915-0	2004	*

References

#5874

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15360

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30078

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26435 (see below)

#40017 ; Curators of the CIP;
#57505 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47094

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86692

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID93521.1 )

#123950 Collection of Institut Pasteur ; Curators of the CIP; CIP 108557

#26435

IJSEM 1757 2004 ( DOI 10.1099/ijs.0.02915-0 , PubMed 15388741 )

* These data were automatically processed and therefore are not curated

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