Name: Catenulispora subtropica TT99-48
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17638

Type strain:

Species: Catenulispora subtropica

Strain Designation: TT99-48

Culture col. no.: DSM 45249, KCTC 19328, NBRC 103395, JCM 16013

Strain history: <- T Tamura & Y Ishida, NBRC <- T Tamura, IFO

NCBI tax ID(s): 450798 (species)

SI-ID 398913

DSM 45249

Special Collections

Section

Catenulispora subtropica TT99-48 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil of paddy field.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Catenulisporales*
	Family	*Catenulisporaceae*
	Genus	*Catenulispora*
	Species	**Catenulispora subtropica**
	Full Scientific Name (LPSN)	Catenulispora subtropica Tamura et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32481]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #32481]	Motility	no

Multimedia content

[Ref.: #15931]

Caption:

Medium 65 28°C

[Ref.: #15931]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15931]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #15931]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #15931]

Culture medium composition

expand / minimize

[Ref.: #15931]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #15931]

Culture medium growth

[Ref.: #15931]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15931]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15931]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32481]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32481]

Ability of spore formation

yes

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32481]	arabinose ChEBI	+	carbon source
[Ref.: #32481]	galactose ChEBI	+	carbon source
[Ref.: #32481]	gluconate ChEBI	+	carbon source
[Ref.: #32481]	glycerol ChEBI	+	carbon source
[Ref.: #32481]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32481]	nitrate ChEBI	+	reduction
[Ref.: #32481]	salicin ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32481]		catalase	+	1.11.1.6
[Ref.: #32481]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15931]	Sample type/isolated from	soil of paddy field
[Ref.: #15931]	Geographic location (country and/or sea, region)	Iriomote Island, Okinawa
[Ref.: #15931]	Country	Japan
[Ref.: #15931]	Country ISO 3 Code	JPN
[Ref.: #15931]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Paddy-field soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Iriomote Island, Okinawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil of paddy field
[Ref.: #67771]	Geographic location (country and/or sea, region)	Iriomote Island, Okinawa
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB327248 (>99% sequence identity) for Catenulispora subtropica from Microbeatlas

Aquatic Samples	78
Soil Samples	1956
Animal Samples	171
Plant Samples	500
Total Samples	2705

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15931]	Catenulispora subtropica gene for 16S rRNA, partial sequence, strain: TT 99-48 (= NBRC 103395)	AB327248	1470	GenBank ENA	450798 tax ID

[Ref.: #15931]	GC-content	70-71 mol%
[Ref.: #32481]	GC-content	69-72 mol%
[Ref.: #67770]	GC-content	70-71 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15931]

Culture collection no.

DSM 45249, KCTC 19328, NBRC 103395, JCM 16013

[Ref.: #86630]

SI-ID 398913

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catenulispora subtropica sp. nov. and Catenulispora yoronensis sp. nov.	Tamura T, Ishida Y, Otoguro M, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.65561-0	2008	*

References

#15931

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45249

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32481

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28701 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86630

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398913.1 )

#28701

IJSEM 1552 2008 ( DOI 10.1099/ijs.0.65561-0 , PubMed 18599693 )

* These data were automatically processed and therefore are not curated

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