Catenulispora yoronensis (DSM 45250, KCTC 19327, NBRC 103397)

Name: Catenulispora yoronensis (DSM 45250, KCTC 19327, NBRC 103397)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17639

Type strain

Strain Designation TT N02-20

Culture col. no. DSM 45250 KCTC 19327 NBRC 103397 TT N02-20 JCM 16014

NCBI tax ID(s) 450799

Special Collections DSMZ JCM KCTC Literature strains

Links

Catenulispora yoronensis TT N02-20 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from forest soil.

Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407928

KCTC 19327,NBRC 103397,JCM 16014,DSM 45250

@ref 20215

Last LPSN update 2025-12-16 09:51:08

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Catenulisporales

Family Catenulisporaceae

Genus Catenulispora

Species Catenulispora yoronensis

Full scientific name Catenulispora yoronensis Tamura et al. 2008

Morphology

Cell morphology

@ref	Gram stain
32481	positive
67771	positive

Pigmentation

32481

Productionyes

Multimedia

@ref:	15932
multimedia content:	DSM_45250.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45250.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15932	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
15932	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15932	YEAST-STARCH-AGAR(B) (DSMZ Medium 656)	Medium recipe at MediaDive	Name: YEAST-STARCH-AGAR(B) (DSMZ Medium 656) Composition: Starch 15.0 g/l Agar 15.0 g/l Yeast extract 4.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15932	positive	growth	28	mesophilic
32481	positive	growth	10-37
32481	positive	optimum	27.5	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
32481	positive	optimum	6.5
32481	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32481	aerobe
67771	aerobe

Observation

67770

Observationquinones: MK-9(H₈), MK-9(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32481	22599 ChEBI	arabinose	+	carbon source
32481	17057 ChEBI	cellobiose	+	carbon source
32481	33984 ChEBI	fucose	+	carbon source
32481	28260 ChEBI	galactose	+	carbon source
32481	24265 ChEBI	gluconate	+	carbon source
32481	17234 ChEBI	glucose	+	carbon source
32481	17754 ChEBI	glycerol	+	carbon source
32481	28087 ChEBI	glycogen	+	carbon source
32481	17306 ChEBI	maltose	+	carbon source
32481	37684 ChEBI	mannose	+	carbon source
32481	506227 ChEBI	N-acetylglucosamine	+	carbon source
32481	17632 ChEBI	nitrate	+	reduction
32481	17814 ChEBI	salicin	+	carbon source
32481	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32481	acid phosphatase	+	3.1.3.2
32481	alkaline phosphatase	+	3.1.3.1
32481	catalase	+	1.11.1.6
32481	pyrazinamidase	+	3.5.1.B15

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15932	forest soil	Yoro Valley, Iriomote Island	Japan	JPN	Asia
67770	Forest soil	Yoro Valley, Chiba Pref.	Japan	JPN	Asia
67771	From forest soil	Yoro Valley, Chiba	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15932	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267515v1 assembly for Catenulispora yoronensis JCM 16014	contig	GCA_042675155	450799	19.24
124043	ASM3953169v1 assembly for Catenulispora yoronensis JCM 16014	scaffold	GCA_039531695	450799	17.7

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15932	Catenulispora yoronensis gene for 16S rRNA, partial sequence, strain: TT N02-20 (= NBRC 103397)	AB327250	1469		450799

GC content

@ref	GC-content (mol%)	Method
15932	69
32481	70-71
67770	69	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catenulispora fulva sp. nov., isolated from forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000711	2015
Phylogeny	Catenulispora graminis sp. nov., a rhizobacterium from bamboo (Phyllostachys nigro var. henonis) rhizosphere soil.	Lee HJ, Han SI, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.035501-0	2011
Phylogeny	Catenulispora subtropica sp. nov. and Catenulispora yoronensis sp. nov.	Tamura T, Ishida Y, Otoguro M, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.65561-0	2008

References

#15932	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45250
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28701	IJSEM 1552 2008 ( DOI 10.1099/ijs.0.65561-0 , PubMed 18599693 )
#32481	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28701
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Catenulispora yoronensis (DSM 45250, KCTC 19327, NBRC 103397)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042675155

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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