Name: Catenulispora yoronensis TT N02-20
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17639

Type strain:

Species: Catenulispora yoronensis

Strain Designation: TT N02-20

Culture col. no.: DSM 45250, KCTC 19327, NBRC 103397, JCM 16014

Strain history: <- T Tamura & Y Ishida, NBRC

NCBI tax ID(s): 450799 (species)

SI-ID 407928

DSM 45250

Special Collections

Section

Catenulispora yoronensis TT N02-20 is an aerobe, Gram-positive bacterium that was isolated from forest soil.

Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Catenulisporales*
	Family	*Catenulisporaceae*
	Genus	*Catenulispora*
	Species	**Catenulispora yoronensis**
	Full Scientific Name (LPSN)	Catenulispora yoronensis Tamura et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32481]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #32481]

Pigment production

yes

Multimedia content

[Ref.: #15932]

Caption:

Medium 65 28°C

[Ref.: #15932]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15932]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #15932]

Culture medium growth

[Ref.: #15932]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15932]

Culture medium composition

expand / minimize

[Ref.: #15932]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #15932]

Culture medium growth

[Ref.: #15932]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15932]

Culture medium composition

expand / minimize

[Ref.: #15932]

Culture medium

YEAST-STARCH-AGAR(B) (DSMZ Medium 656)

[Ref.: #15932]

Culture medium growth

[Ref.: #15932]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15932]	growth	28 °C
[Ref.: #32481]	growth	10-37 °C
[Ref.: #32481]	optimum	27.5 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32481]			optimum	6.5
[Ref.: #32481]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32481]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32481]	arabinose ChEBI	+	carbon source
[Ref.: #32481]	cellobiose ChEBI	+	carbon source
[Ref.: #32481]	fucose ChEBI	+	carbon source
[Ref.: #32481]	galactose ChEBI	+	carbon source
[Ref.: #32481]	gluconate ChEBI	+	carbon source
[Ref.: #32481]	glucose ChEBI	+	carbon source
[Ref.: #32481]	glycerol ChEBI	+	carbon source
[Ref.: #32481]	glycogen ChEBI	+	carbon source
[Ref.: #32481]	maltose ChEBI	+	carbon source
[Ref.: #32481]	mannose ChEBI	+	carbon source
[Ref.: #32481]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32481]	nitrate ChEBI	+	reduction
[Ref.: #32481]	salicin ChEBI	+	carbon source
[Ref.: #32481]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32481]	acid phosphatase	+	3.1.3.2
[Ref.: #32481]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32481]	catalase	+	1.11.1.6
[Ref.: #32481]	pyrazinamidase	+	3.5.1.B15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15932]	Sample type/isolated from	forest soil
[Ref.: #15932]	Geographic location (country and/or sea, region)	Yoro Valley, Iriomote Island
[Ref.: #15932]	Country	Japan
[Ref.: #15932]	Country ISO 3 Code	JPN
[Ref.: #15932]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Forest soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yoro Valley, Chiba Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From forest soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yoro Valley, Chiba
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15932]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15932]	Catenulispora yoronensis gene for 16S rRNA, partial sequence, strain: TT N02-20 (= NBRC 103397)	AB327250	1469	GenBank ENA	450799 tax ID

[Ref.: #15932]	GC-content	69 mol%
[Ref.: #32481]	GC-content	70-71 mol%
[Ref.: #67770]	GC-content	69 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15932]

Culture collection no.

DSM 45250, KCTC 19327, NBRC 103397, JCM 16014

[Ref.: #86631]

SI-ID 407928

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catenulispora fulva sp. nov., isolated from forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000711	2015	*
Phylogeny	Catenulispora graminis sp. nov., a rhizobacterium from bamboo (Phyllostachys nigro var. henonis) rhizosphere soil.	Lee HJ, Han SI, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.035501-0	2011	*
Phylogeny	Catenulispora subtropica sp. nov. and Catenulispora yoronensis sp. nov.	Tamura T, Ishida Y, Otoguro M, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.65561-0	2008	*

References

#15932

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45250

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32481

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28701 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#86631

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407928.1 )

#28701

IJSEM 1552 2008 ( DOI 10.1099/ijs.0.65561-0 , PubMed 18599693 )

* These data were automatically processed and therefore are not curated

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