Strain identifier

BacDive ID: 17638

Type strain: Yes

Species: Catenulispora subtropica

Strain Designation: TT99-48

Strain history: <- T Tamura & Y Ishida, NBRC <- T Tamura, IFO

NCBI tax ID(s): 450798 (species)

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General

@ref: 15931

BacDive-ID: 17638

DSM-Number: 45249

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Catenulispora subtropica TT99-48 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil of paddy field.

NCBI tax id

  • NCBI tax id: 450798
  • Matching level: species

strain history

@refhistory
15931<- NBRC; NBRC 103395 <- T. Tamura
67770KCTC 19328 <-- T. Tamura TT 99-48.
67771<- T Tamura & Y Ishida, NBRC <- T Tamura, IFO

doi: 10.13145/bacdive17638.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Catenulisporales
  • family: Catenulisporaceae
  • genus: Catenulispora
  • species: Catenulispora subtropica
  • full scientific name: Catenulispora subtropica Tamura et al. 2008

@ref: 15931

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Catenulisporaceae

genus: Catenulispora

species: Catenulispora subtropica

full scientific name: Catenulispora subtropica Tamura et al. 2008

strain designation: TT99-48

type strain: yes

Morphology

cell morphology

@refgram stainmotility
32481positiveno
67771positive

multimedia

  • @ref: 15931
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45249.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15931ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
15931GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
15931positivegrowth28
67770positivegrowth28
67771positivegrowth28

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32481aerobe
67771aerobe

spore formation

  • @ref: 32481
  • spore formation: yes

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3248122599arabinose+carbon source
3248128260galactose+carbon source
3248124265gluconate+carbon source
3248117754glycerol+carbon source
32481506227N-acetylglucosamine+carbon source
3248117814salicin+carbon source
3248117632nitrate+reduction

enzymes

@refvalueactivityec
32481catalase+1.11.1.6
32481gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15931soil of paddy fieldIriomote Island, OkinawaJapanJPNAsia
67770Paddy-field soilIriomote Island, Okinawa Pref.JapanJPNAsia
67771From soil of paddy fieldIriomote Island, OkinawaJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_28134.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_3004;97_3691;98_21040;99_28134&stattab=map
  • Last taxonomy: Catenulispora subtropica
  • 16S sequence: AB327248
  • Sequence Identity:
  • Total samples: 2705
  • soil counts: 1956
  • aquatic counts: 78
  • animal counts: 171
  • plant counts: 500

Safety information

risk assessment

  • @ref: 15931
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15931
  • description: Catenulispora subtropica gene for 16S rRNA, partial sequence, strain: TT 99-48 (= NBRC 103395)
  • accession: AB327248
  • length: 1470
  • database: nuccore
  • NCBI tax ID: 450798

GC content

@refGC-contentmethod
1593170-71
3248169-72
6777070-71high performance liquid chromatography (HPLC)

External links

@ref: 15931

culture collection no.: DSM 45249, KCTC 19328, NBRC 103395, JCM 16013

straininfo link

  • @ref: 86630
  • straininfo: 398913

literature

  • topic: Phylogeny
  • Pubmed-ID: 18599693
  • title: Catenulispora subtropica sp. nov. and Catenulispora yoronensis sp. nov.
  • authors: Tamura T, Ishida Y, Otoguro M, Suzuki K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65561-0
  • year: 2008
  • mesh: Actinomycetales/*classification/growth & development/isolation & purification, Japan, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15931Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45249)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45249
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32481Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2870128776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86630Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398913.1StrainInfo: A central database for resolving microbial strain identifiers