Vibrio fluvialis (DSM 19283, ATCC 33809, CCM 3689)

Name: Vibrio fluvialis (DSM 19283, ATCC 33809, CCM 3689)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17321

Type strain

Strain Designation VL 5125, 5125

Culture col. no. DSM 19283 ATCC 33809 CCM 3689 CCTM La 3552 CCUG 13622 21 more

NCBI tax ID(s) 1219074 676

Special Collections DSMZ CCUG JCM KCTC CIP

History <- CCM; CCM 3689 <- J. V. Lee; 5125 NCTC 11327 <-- J. V. Lee VL 5125 <-- I. Hug 30. CIP <- 1989, NCTC <- 1979, J.V. Lee, Preston Hall Hosp., Maidston, UK: strain VL5125, Group F Vibrio <- Cholera Res. Lab., Dacca Bangladesh

Links

Vibrio fluvialis VL 5125 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from human faeces, diarrhoea.

Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389395

LMG 7894,ATCC 33809,CCUG 13622,NCTC 11327,CAIM 593,CCUG 15268,CCUG 20252,CIP 103355,JCM 3752,NCIMB 2249,CCM 3689,IAM 14403,LMD 81.34,CECT 4217,CCRC 12830,KCTC 2473,CGMCC1.1608,NCCB 81034,BCRC 12830,NBRC 103150,IMET 11293,DSM 19283

@ref 20215

Last LPSN update 2026-02-09 11:22:11

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio fluvialis

Full scientific name Vibrio fluvialis Lee et al. 1981

Synonyms (2)

Allomonas enterica
"Allomonas enterica"

BacDive ID	Other strains from **Vibrio fluvialis** (37)	Type strain
135171	V. fluvialis CIP 70.66
135265	V. fluvialis 40, CIP 108463, VKM B-1485, ATCC 35843
139228	V. fluvialis 40, CIP 103174
142667	V. fluvialis CCUG 13623
142843	V. fluvialis CCUG 15268
143567	V. fluvialis CCUG 20253
143568	V. fluvialis CCUG 20254
143569	V. fluvialis CCUG 20257
143570	V. fluvialis CCUG 20259
143571	V. fluvialis CCUG 20267, ATCC 33812, NCTC 11328, JCM 1282, ...
143572	V. fluvialis CCUG 20268
143573	V. fluvialis CCUG 20271
148146	V. fluvialis CCUG 34900
148147	V. fluvialis CCUG 34901
150827	V. fluvialis CCUG 42499
151010	V. fluvialis CCUG 43034
153879	V. fluvialis CCUG 51484
155176	V. fluvialis CCUG 56799
164795	V. fluvialis JCM 3733
164796	V. fluvialis JCM 3734
164797	V. fluvialis JCM 3735
164798	V. fluvialis JCM 3736
164799	V. fluvialis JCM 3737
164800	V. fluvialis JCM 3738
164801	V. fluvialis JCM 3739
164802	V. fluvialis JCM 3740
164803	V. fluvialis JCM 3741
164804	V. fluvialis JCM 3742
164805	V. fluvialis JCM 3743
164806	V. fluvialis JCM 3744
164807	V. fluvialis JCM 3745
164808	V. fluvialis JCM 3746
164809	V. fluvialis JCM 3747
164810	V. fluvialis JCM 3748
164811	V. fluvialis JCM 3749
164812	V. fluvialis JCM 3750
164813	V. fluvialis JCM 3751

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		97.7
125438	negative		100
119414	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7995	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
7995	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7995	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41864	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119414	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7995	positive	growth	30	mesophilic
41864	positive	growth	25	mesophilic
67770	positive	growth	30	mesophilic
119414	positive	growth	15-41
119414	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119414	facultative anaerobe
125439	obligate aerobe	96.5

Spore formation

@ref	Spore formation	Confidence
125439		97.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119414	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
119414	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
119414	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
119414	17234 ChEBI	glucose	+	fermentation
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
119414	17716 ChEBI	lactose	-	fermentation
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
119414	17632 ChEBI	nitrate	+	reduction
119414	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
119414	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
119414	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119414	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
119414	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
119414	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
119414	17234 ChEBI	glucose		+
68369	35581 ChEBI	indole			+	from API 20NE
68368	35581 ChEBI	indole			+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119414	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119414	amylase	+
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
119414	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119414	caseinase	+	3.4.21.50
119414	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
119414	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119414	gamma-glutamyltransferase	+	2.3.2.2
119414	gelatinase	+
68369	gelatinase	+		from API 20NE
68368	gelatinase	-		from API 20E
119414	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
119414	lipase	+
68382	lipase (C 14)	+		from API zym
119414	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119414	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
119414	oxidase	+
119414	phenylalanine ammonia-lyase	-	4.3.1.24
119414	protease	+
68382	trypsin	-	3.4.21.4	from API zym
119414	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
119414	tween esterase	+
119414	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7995	+	+	-	-	-	-	-	-	+	-	-	+/-	+	-	-	-	-	-	+/-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119414	-	+	+	+	+	+	+	-	-	-	+	+	-	+	-	+	+	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7995	+	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	-	+	+	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119414	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	+	-	+	+	+	+	+	+	-	-	-	-	-	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	+	-	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	-	-	-	+	-	+	+	+	+	+	+	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
7995	human faeces, diarrhoea	Dacca	Bangladesh	BGD	Asia	23.7104	90.4074 23.7104/90.4074
67770	Human feces	Dacca	Bangladesh	BGD	Asia
119414	Human, Feces	Dhaka	Bangladesh	BGD	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC050178 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	1720
Soil Samples	168
Animal Samples	1806
Plant Samples	124
Total Samples	3818

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7995	2	Risk group (German classification) According to TRBA 466
119414	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Vibrio fluvialis strain ATCC 33809	complete		676.24		676	99
66792	ASM155841v2 assembly for Vibrio fluvialis ATCC 33809	complete	GCA_001558415	676.375	2718218390	676	98.86
67770	41665_F02 assembly for Vibrio fluvialis NCTC11327	contig	GCA_900460245	676.75	8033557164	676	78.63
67770	ASM159883v1 assembly for Vibrio fluvialis NBRC 103150	contig	GCA_001598835	1219074.3	2681812983	1219074	70.67
67770	ASM189065v1 assembly for Vibrio fluvialis NCTC 11327	scaffold	GCA_001890655	676.29	8109269853	676	33.38

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Vibrio fluvialis DNA, 16S-23S rRNA intergenic spacer and 23S rRNA, partial sequence, strain: IAM 14403	AB255719	256	676
20218	Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence	AF413005	482	676
20218	Vibrio fluvialis 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu and tRNA-Val genes, complete sequence	AF413006	679	676
20218	Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu, tRNA-Ala, and tRNA-Val genes, complete sequence	AF413007	710	676
20218	Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence	AF413008	557	676
20218	Vibrio fluvialis strain ATCC 33809 16S ribosomal RNA gene, partial sequence	GU048832	460	676
20218	V.fluvialis (NCTC 11327 T) 16S rRNA gene	X76335	1537	676
7995	V.fluvialis (ATCC 33809T) gene for 16S ribosomal RNA	X74703	1457	676
67770	Vibrio fluvialis gene for 16S ribosomal RNA, partial cds, strain: JCM 1281	LC050178	1475	676
124043	Vibrio fluvialis gene for 16S rRNA, partial sequence, strain: NBRC 103150.	AB681959	1478	676
124043	Vibrio fluvialis strain CGMCC1.1608 16S ribosomal RNA gene, partial sequence; tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY245213	449	676
124043	Vibrio fluvialis strain CGMCC1.1608 16S ribosomal RNA gene, partial sequence; tRNA-Glu gene, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY245214	491	676
124043	Vibrio fluvialis strain CGMCC1.1608 16S ribosomal RNA gene, partial sequence; tRNA-Glu, tRNA-Lys, and tRNA-Val genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY245215	689	676
124043	Vibrio fluvialis strain CGMCC1.1608 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence.	AY245216	567	676
124043	Vibrio mimicus strain 03-4472g2 16S ribosomal RNA gene, partial sequence.	GU048831	457	676
124043	Vibrio mimicus strain 03-4472g2 16S ribosomal RNA gene, partial sequence.	GU048833	457	676
124043	Vibrio mimicus strain 03-4472g2 16S ribosomal RNA gene, partial sequence.	GU048834	457	676
124043	Vibrio fluvialis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1281.	LC271220	1477	676
124043	Vibrio fluvialis strain NBRC 103150 16S ribosomal RNA gene, partial sequence.	OQ147499	947	676

GC content

@ref	GC-content (mol%)	Method
67770	50	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio fluvialis ATCC 33809
NCBI: GCA_001558415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.50	no
125439	gram_stain	BacteriaNetⓘ	negative	97.70	no
125439	motility	BacteriaNetⓘ	yes	78.60	no
125439	spore_formation	BacteriaNetⓘ	no	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio fluvialis ATCC 33809
NCBI: GCA_001558415.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	93.91	yes
125438	aerobic	aerobicⓘ	no	68.51	yes
125438	spore-forming	spore-formingⓘ	no	88.52	no
125438	thermophilic	thermophileⓘ	no	99.24	no
125438	flagellated	motile2+ⓘ	yes	89.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Virulence and Antibiotic Resistance Characteristics of Vibrio Isolates From Rustic Environmental Freshwaters.	Gxalo O, Digban TO, Igere BE, Olapade OA, Okoh AI, Nwodo UU.	Front Cell Infect Microbiol	10.3389/fcimb.2021.732001	2021
	Molecular Detection and Distribution of Six Medically Important Vibrio spp. in Selected Freshwater and Brackish Water Resources in Eastern Cape Province, South Africa.	Abioye OE, Osunla AC, Okoh AI.	Front Microbiol	10.3389/fmicb.2021.617703	2021
	Limpet (Scutellastra cochlear) Recovered From Some Estuaries in the Eastern Cape Province, South Africa Act as Reservoirs of Pathogenic Vibrio Species.	Abioye OE, Okoh AI.	Front Public Health	10.3389/fpubh.2018.00237	2018
Enzymology	Occurrence of Vibrio pathotypes in the final effluents of five wastewater treatment plants in Amathole and Chris Hani District Municipalities in South Africa.	Nongogo V, Okoh AI.	Int J Environ Res Public Health	10.3390/ijerph110807755	2014
Enzymology	Prevalence and characterisation of non-cholerae Vibrio spp. in final effluents of wastewater treatment facilities in two districts of the Eastern Cape Province of South Africa: implications for public health.	Okoh AI, Sibanda T, Nongogo V, Adefisoye M, Olayemi OO, Nontongana N.	Environ Sci Pollut Res Int	10.1007/s11356-014-3461-z	2015
Phylogeny	Antibiotic susceptibility profiles of some Vibrio strains isolated from wastewater final effluents in a rural community of the Eastern Cape Province of South Africa.	Okoh AI, Igbinosa EO.	BMC Microbiol	10.1186/1471-2180-10-143	2010
	Vibrio cholerae genome isolated from the Nebraska salt marshes contains several antibiotic resistance markers.	Kyndt JA.	Microbiol Resour Announc	10.1128/mra.00007-25	2025
	Haemolysins are essential to the pathogenicity of deep-sea Vibrio fluvialis.	Wang Y, Luo J, Zhao Y, Zhang J, Guan X, Sun L.	iScience	10.1016/j.isci.2024.109558	2024
	Characterization of quorum regulatory small RNAs in an emerging pathogen Vibrio fluvialis and their roles toward type VI secretion system VflT6SS2 modulation.	Zhang A, Xiao Y, Han Y, Huang Y, Kan B, Liang W.	Emerg Microbes Infect	10.1080/22221751.2024.2396872	2024
	Antibacterial activity against pathogenic Vibrio and cytotoxicity on human hepatocyte of nano-silver prepared by polysaccharide-protein complexes.	He P, Wang W, Jian W.	Front Microbiol	10.3389/fmicb.2024.1416844	2024
	Microwave-assisted synthesis of novel Ti/BTB-MOFs as porous anticancer and antibacterial agents.	Altharawi A, Alqahtani SM, Aldakhil T, Ahmad I.	Front Chem	10.3389/fchem.2024.1386311	2024
Genetics	Case Report: Vibrio fluvialis isolated from a wound infection after a piercing trauma in the Baltic Sea.	Hecht J, Borowiak M, Fortmeier B, Dikou S, Gierer W, Klempien I, Nekat J, Schaefer S, Strauch E.	Access Microbiol	10.1099/acmi.0.000312	2022
	Exploring the mechanisms and mode of action of bioactive compounds from marine Streptomyces albidoflavus against breast carcinoma cells.	Shata AM, Rejili MS, El-Naggar MM, El-Asser SA, Saleh AA, Hafez EE, Haouala F, Youssef AS.	BMC Biotechnol	10.1186/s12896-025-00991-5	2025
Genetics	Hybridization capture sequencing for Vibrio spp. and associated virulence factors.	Brumfield KD, Enke S, Swan BK, Carrasquilla L, Lee MD, Stern DB, Gieser L, Hasan NA, Usmani M, Jutla AS, Huq A, Caviness K, Goodrich JS, Bull R, Colwell RR.	mBio	10.1128/mbio.00516-25	2025
	The organosulfur compound dimethylsulfoniopropionate (DMSP) is utilized as an osmoprotectant by Vibrio species.	Gregory GJ, Boas KE, Boyd EF.	Appl Environ Microbiol	10.1128/aem.02235-20	2021
Genetics	Comparative Genomic and Secretomic Analysis Provide Insights Into Unique Agar Degradation Function of Marine Bacterium Vibrio fluvialis A8 Through Horizontal Gene Transfer.	Li C, Li C, Li L, Yang X, Chen S, Qi B, Zhao Y.	Front Microbiol	10.3389/fmicb.2020.01934	2020
Genetics	Population genomics of the food-borne pathogen Vibrio fluvialis reveals lineage associated pathogenicity-related genetic elements.	Zheng H, Huang Y, Liu P, Yan L, Zhou Y, Yang C, Wu Y, Qin J, Guo Y, Pei X, Guo Y, Cui Y, Liang W.	Microb Genom	10.1099/mgen.0.000769	2022
	In Vitro and In Silico Screening of Anti-Vibrio spp., Antibiofilm, Antioxidant and Anti-Quorum Sensing Activities of Cuminum cyminum L. Volatile Oil.	Ghannay S, Aouadi K, Kadri A, Snoussi M.	Plants (Basel)	10.3390/plants11172236	2022
Genetics	Genome characterization of two bile-isolated Vibrio fluvialis strains: an insight into pathogenicity and bile salt adaption.	Zheng B, Jiang X, Cheng H, Guo L, Zhang J, Xu H, Yu X, Huang C, Ji J, Ying C, Feng Y, Xiao Y, Li L.	Sci Rep	10.1038/s41598-017-12304-8	2017
	Development of Multienzyme Isothermal Rapid Amplification (MIRA) Combined with Lateral-Flow Dipstick (LFD) Assay to Detect Species-Specific tlh and Pathogenic trh and tdh Genes of Vibrio parahaemolyticus.	Park SB, Zhang Y.	Pathogens	10.3390/pathogens13010057	2024
	Real-Time PCR Protocol for Detection and Quantification of Three Pathogenic Members of the Vibrionaceae Family.	Costa C, Ferreira GD, Simoes M, Silva JL, Campos MJ.	Microorganisms	10.3390/microorganisms10102060	2022
Metabolism	Investigations of Dimethylglycine, Glycine Betaine, and Ectoine Uptake by a Betaine-Carnitine-Choline Transporter Family Transporter with Diverse Substrate Specificity in Vibrio Species.	Gregory GJ, Dutta A, Parashar V, Boyd EF.	J Bacteriol	10.1128/jb.00314-20	2020
	Occurrence of Virulence Genes Associated with Human Pathogenic Vibrios Isolated from Two Commercial Dusky Kob (Argyrosmus japonicus) Farms and Kareiga Estuary in the Eastern Cape Province, South Africa.	Fri J, Ndip RN, Njom HA, Clarke AM.	Int J Environ Res Public Health	10.3390/ijerph14101111	2017
Pathogenicity	Antibacterial, Antifungal and Antibiofilm Activities of Silver Nanoparticles Supported by Crude Bioactive Metabolites of Bionanofactories Isolated from Lake Mariout.	Eltarahony M, Ibrahim A, El-Shall H, Ibrahim E, Althobaiti F, Fayad E.	Molecules	10.3390/molecules26103027	2021
	Functional Characterization and Conditional Regulation of the Type VI Secretion System in Vibrio fluvialis.	Huang Y, Du P, Zhao M, Liu W, Du Y, Diao B, Li J, Kan B, Liang W.	Front Microbiol	10.3389/fmicb.2017.00528	2017
Metabolism	Identification of an iron-regulated hemin-binding outer membrane protein, HupO, in Vibrio fluvialis: effects on hemolytic activity and the oxidative stress response.	Ahn SH, Han JH, Lee JH, Park KJ, Kong IS.	Infect Immun	10.1128/iai.73.2.722-729.2005	2005
Enzymology	A multiplex PCR/LDR assay for simultaneous detection and identification of the NIAID category B bacterial food and water-borne pathogens.	Rundell MS, Pingle M, Das S, Hussain A, Ocheretina O, Charles M, Larone DH, Spitzer ED, Golightly L, Barany F.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2014.02.022	2014
	Recruitment of CRISPR-Cas systems by Tn7-like transposons.	Peters JE, Makarova KS, Shmakov S, Koonin EV.	Proc Natl Acad Sci U S A	10.1073/pnas.1709035114	2017
Phylogeny	Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics.	Kim HJ, Ryu JO, Lee SY, Kim ES, Kim HY.	BMC Microbiol	10.1186/s12866-015-0577-3	2015
Enzymology	Development of a toxR-based loop-mediated isothermal amplification assay for detecting Vibrio parahaemolyticus.	Chen S, Ge B.	BMC Microbiol	10.1186/1471-2180-10-41	2010
Enzymology	Comparison of conventional, nested, and real-time quantitative PCR for diagnosis of scrub typhus.	Kim DM, Park G, Kim HS, Lee JY, Neupane GP, Graves S, Stenos J.	J Clin Microbiol	10.1128/jcm.01216-09	2011
Metabolism	Rapid detection of viable salmonellae in produce by coupling propidium monoazide with loop-mediated isothermal amplification.	Chen S, Wang F, Beaulieu JC, Stein RE, Ge B.	Appl Environ Microbiol	10.1128/aem.00354-11	2011
Metabolism	TaqMan PCR for detection of Vibrio cholerae O1, O139, non-O1, and non-O139 in pure cultures, raw oysters, and synthetic seawater.	Lyon WJ.	Appl Environ Microbiol	10.1128/aem.67.10.4685-4693.2001	2001
Enzymology	Vibrio furnissii (formerly aerogenic biogroup of Vibrio fluvialis), a new species isolated from human feces and the environment.	Brenner DJ, Hickman-Brenner FW, Lee JV, Steigerwalt AG, Fanning GR, Hollis DG, Farmer JJ, Weaver RE, Joseph SW, Seidler RJ.	J Clin Microbiol	10.1128/jcm.18.4.816-824.1983	1983
Pathogenicity	Bacillus cereus Response to a Proanthocyanidin Trimer, a Transcriptional and Functional Analysis.	Tamura T, Ozawa M, Tanaka N, Arai S, Mura K.	Curr Microbiol	10.1007/s00284-016-1032-x	2016
Enzymology	Cloning and nucleotide sequence of the gyrB gene of Vibrio parahaemolyticus and its application in detection of this pathogen in shrimp.	Venkateswaran K, Dohmoto N, Harayama S.	Appl Environ Microbiol	10.1128/aem.64.2.681-687.1998	1998
	Vibrio vulnificus Type 6 Secretion System 1 Contains Anti-Bacterial Properties.	Church SR, Lux T, Baker-Austin C, Buddington SP, Michell SL.	PLoS One	10.1371/journal.pone.0165500	2016
Metabolism	Viscosity dictates metabolic activity of Vibrio ruber.	Boric M, Danevcic T, Stopar D.	Front Microbiol	10.3389/fmicb.2012.00255	2012
Pathogenicity	In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria.	Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y.	Antimicrob Agents Chemother	10.1128/aac.01454-17	2018
Phylogeny	Numerical taxonomy of phenanthrene-degrading bacteria isolated from the Chesapeake Bay.	West PA, Okpokwasili GC, Brayton PR, Grimes DJ, Colwell RR.	Appl Environ Microbiol	10.1128/aem.48.5.988-993.1984	1984
Phylogeny	Analysis of gyrB and toxR gene sequences of Vibrio hollisae and development of gyrB- and toxR-targeted PCR methods for isolation of V. hollisae from the environment and its identification.	Vuddhakul V, Nakai T, Matsumoto C, Oh T, Nishino T, Chen CH, Nishibuchi M, Okuda J.	Appl Environ Microbiol	10.1128/aem.66.8.3506-3514.2000	2000
Genetics	Complete genomic sequence of Vibrio fluvialis strain IDH5335 isolated from a patient with diarrhea in Kolkata, India.	Chowdhury G, Kitahara K, Taniguchi M, Uesaka K, Muzembo BA, Mitra D, Ohno A, Ramamurthy T, Dutta S, Miyoshi S-i, Mukhopadhyay AK.	Microbiol Resour Announc	10.1128/mra.00707-23	2023
	Weissella sp. SNUL2 as potential probiotics with broad-spectrum antimicrobial activities.	Han JW, Lee N, Kim HJ, Moon SJ, Lee SC, Kim HJ.	Heliyon	10.1016/j.heliyon.2024.e28481	2024
	Enhancement of Antioxidant and Antibacterial Activities of Salvia miltiorrhiza Roots Fermented with Aspergillus oryzae.	Moon K, Cha J.	Foods	10.3390/foods9010034	2020
	Behavior of Vibrio spp. in Table Olives.	Posada-Izquierdo GD, Valero A, Arroyo-Lopez FN, Gonzalez-Serrano M, Ramos-Benitez AM, Benitez-Cabello A, Rodriguez-Gomez F, Jimenez-Diaz R, Garcia-Gimeno RM.	Front Microbiol	10.3389/fmicb.2021.650754	2021
Enzymology	High Hydrostatic Pressure Inducible Trimethylamine N-Oxide Reductase Improves the Pressure Tolerance of Piezosensitive Bacteria Vibrio fluvialis.	Yin QJ, Zhang WJ, Qi XQ, Zhang SD, Jiang T, Li XG, Chen Y, Santini CL, Zhou H, Chou IM, Wu LF	Front Microbiol	10.3389/fmicb.2017.02646	2018
Phylogeny	Vibrio sinensis sp. nov. and Vibrio viridaestus sp. nov., two marine bacteria isolated from the East China Sea.	Li Y, Liang J, Liu R, Xue CX, Zhou S, He X, Li B, Wang X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003842	2020
Phylogeny	Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).	Rameshkumar N, Fukui Y, Sawabe T, Nair S	Int J Syst Evol Microbiol	10.1099/ijs.0.65604-0	2008
Phylogeny	Vibrio ostreae sp. nov., a novel gut bacterium isolated from a Yellow Sea oyster.	Muhammad N, Nguyen TTH, Lee YJ, Ko J, Avila F, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.005586	2022

References

#7995	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19283
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41864	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119414	Collection of Institut Pasteur ; Curators of the CIP; CIP 103355
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio fluvialis (DSM 19283, ATCC 33809, CCM 3689)

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