[Ref.: #7995]
Sample type/isolated from
human faeces, diarrhoea
[Ref.: #7995]
Geographic location (country and/or sea, region)
Dacca
[Ref.: #7995]
Country
Bangladesh
[Ref.: #7995]
Country ISO 3 Code
BGD
[Ref.: #7995]
Continent
Asia
[Ref.: #7995]
Geographic location
23.7104°/90.4074°
[Ref.: #67770]
Sample type/isolated from
Human feces
[Ref.: #67770]
Geographic location (country and/or sea, region)
Dacca
[Ref.: #67770]
Country
Bangladesh
[Ref.: #67770]
Country ISO 3 Code
BGD
[Ref.: #67770]
Continent
Asia
* marker position based on {}
Isolation sources categories
#Host
#Human
-
#Host Body Product
#Gastrointestinal tract
#Feces (Stool)
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
16S Sequence information:
Only first 5 entries are displayed. Click here to see all. Click here to see only first 5 entries.
Sequence accession description
Seq. accession number
Sequence length (bp)
Sequence database
Associated NCBI tax ID
[Ref.: #20218]
Vibrio fluvialis DNA, 16S-23S rRNA intergenic spacer and 23S rRNA, partial sequence, strain: IAM 14403
AB255719
256
676 tax ID
*
[Ref.: #20218]
Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence
AF413005
482
676 tax ID
*
[Ref.: #20218]
Vibrio fluvialis 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu and tRNA-Val genes, complete sequence
AF413006
679
676 tax ID
*
[Ref.: #20218]
Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu, tRNA-Ala, and tRNA-Val genes, complete sequence
AF413007
710
676 tax ID
*
[Ref.: #20218]
Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence
AF413008
557
676 tax ID
*
[Ref.: #20218]
Vibrio fluvialis strain ATCC 33809 16S ribosomal RNA gene, partial sequence
GU048832
460
676 tax ID
*
[Ref.: #20218]
Vibrio fluvialis strain NCTC 11327 clone XMYP7 16S ribosomal RNA gene, partial sequence
JX009143
1291
676 tax ID
*
[Ref.: #20218]
V.fluvialis (NCTC 11327 T) 16S rRNA gene
X76335
1537
676 tax ID
*
[Ref.: #7995]
V.fluvialis (ATCC 33809T) gene for 16S ribosomal RNA
X74703
1457
676 tax ID
[Ref.: #67770]
Vibrio fluvialis gene for 16S ribosomal RNA, partial cds, strain: JCM 1281
LC050178
1475
676 tax ID
[Ref.: #67770]
GC-content
50 mol%
thermal denaturation, midpoint method (Tm)
Availability in culture collections External links
[Ref.: #7995]
Culture collection no.
DSM 19283 , ATCC 33809 , CCM 3689 , CCTM La 3552, CCUG 13622 , CDC 9555-78, IAM 14403, JCM 3752 , LMG 7894 , NCIMB 2249, NCTC 11327 , WDCM 00137, JCM 1281 , BCRC 12830 , CAIM 593 , CCUG 15268 , CCUG 20252 , CDC 9555-18, CECT 4217 , CGMCC 1.1608 , CIP 103355 , KCTC 2473 , NBRC 103150 , NRIC 0818
[Ref.: #20218]
Associated Passport(s) in StrainInfo
857699 , 22423 , 221202 , 221203 , 22425 , 147339 , 221204 , 156151 , 22422 , 206200 , 22429 , 841431 , 866289
Literature:
Topic
Title
Authors
Journal
DOI
Year
Phylogeny
Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).
Rameshkumar N, Fukui Y, Sawabe T, Nair S
Int J Syst Evol Microbiol
10.1099/ijs.0.65604-0
2008
*
Enzymology
High Hydrostatic Pressure Inducible Trimethylamine N-Oxide Reductase Improves the Pressure Tolerance of Piezosensitive Bacteria Vibrio fluvialis.
Yin QJ, Zhang WJ, Qi XQ, Zhang SD, Jiang T, Li XG, Chen Y, Santini CL, Zhou H, Chou IM, Wu LF
Front Microbiol
10.3389/fmicb.2017.02646
2018
*
Phylogeny
Vibrio sinensis sp. nov. and Vibrio viridaestus sp. nov., two marine bacteria isolated from the East China Sea.
Li Y, Liang J, Liu R, Xue CX, Zhou S, He X, Li B, Wang X, Zhang XH
Int J Syst Evol Microbiol
10.1099/ijsem.0.003842
2020
*
Phylogeny
Vibrio ostreae sp. nov., a novel gut bacterium isolated from a Yellow Sea oyster.
Muhammad N, Nguyen TTH, Lee YJ, Ko J, Avila F, Kim SG
Int J Syst Evol Microbiol
10.1099/ijsem.0.005586
2022
*
References
#7995
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 19283
#41864
; Curators of the CIP;
#67770
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368
Automatically annotated from API 20E .
#68369
Automatically annotated from API 20NE .
#69479
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
* These data were automatically processed and therefore are not curated
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