Name: Vibrio fluvialis VL 5125
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17321

Type strain:

Species: Vibrio fluvialis

Strain Designation: VL 5125, 5125

Culture col. no.: DSM 19283, ATCC 33809, CCM 3689, CCTM La 3552, CCUG 13622, CDC 9555-78, IAM 14403, JCM 3752, LMG 7894, NCIMB 2249, NCTC 11327, WDCM 00137, JCM 1281, BCRC 12830, CAIM 593, CCUG 15268, CCUG 20252, CDC 9555-18, CECT 4217, CGMCC 1.1608, CIP 103355, KCTC 2473, NBRC 103150, NRIC 0818

Strain history: CIP <- 1989, NCTC <- 1979, J.V. Lee, Preston Hall Hosp., Maidston, UK: strain VL5125, Group F Vibrio <- Cholera Res. Lab., Dacca Bangladesh

NCBI tax ID(s): 1219074 (strain), 676 (species)

SI-ID 389395

LMG 7894, ATCC 33809, CCUG 13622, NCTC 11327, CCUG 15268, CCUG 20252, CIP 103355, JCM 3752, NCIMB 2249, CCM 3689, IAM 14403, LMD 81.34, CECT 4217, CCRC 12830, KCTC 2473, CGMCC1.1608, NCCB 81034, BCRC 12830, NBRC 103150, IMET 11293, DSM 19283

Other strains from Vibrio fluvialis

Section

Vibrio fluvialis VL 5125 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from human faeces, diarrhoea.

motile
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio fluvialis**
	Full Scientific Name (LPSN)	Vibrio fluvialis Lee et al. 1981

Synonym

Allomonas enterica

Information on morphological and physiological properties Morphology

[Ref.: #119414]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.98

[Ref.: #119414]	Cell shape	rod-shaped

[Ref.: #119414]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.489

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7995]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7995]

Culture medium growth

[Ref.: #7995]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7995]

Culture medium composition

expand / minimize

[Ref.: #7995]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7995]

Culture medium growth

[Ref.: #7995]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7995]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7995]

Culture medium growth

[Ref.: #7995]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #41864]

Culture medium

Marine agar (MA)

[Ref.: #41864]

Culture medium growth

[Ref.: #41864]

Culture medium composition

expand / minimize

[Ref.: #119414]

Culture medium

CIP Medium 13

[Ref.: #119414]

Culture medium growth

[Ref.: #119414]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7995]		growth	30 °C
[Ref.: #41864]		growth	25 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #119414]		growth	15-41 °C
[Ref.: #119414]	no	growth	5 °C

[Ref.: #7995]	Temperature range	mesophilic
[Ref.: #41864]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #119414]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119414]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.959

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #119414]		NaCl		growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE, API 20E
[Ref.: #119414]	citrate ChEBI	+	carbon source
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #119414]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #119414]	glucose ChEBI	+	fermentation
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #119414]	lactose ChEBI	-	fermentation
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #119414]	nitrate ChEBI	+	reduction
[Ref.: #119414]	nitrate ChEBI	+	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #119414]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #119414]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE, API 20E
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119414]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite	Production
[Ref.: #119414]	indole ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68369]	indole ChEBI	yes	* from API 20NE, API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #119414]	acetoin ChEBI	-
[Ref.: #119414]	glucose ChEBI		+
[Ref.: #68368]	acetoin ChEBI	-			* from API 20E
[Ref.: #68369]	indole ChEBI			+	* from API 20NE, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119414]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119414]	amylase	+
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE, API 20E
[Ref.: #119414]	beta-galactosidase	+	3.2.1.23
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119414]	caseinase	+	3.4.21.50
[Ref.: #119414]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE, API 20E
[Ref.: #119414]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119414]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119414]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #119414]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119414]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #119414]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119414]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #119414]	oxidase	+
[Ref.: #119414]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #119414]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119414]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #119414]	tween esterase	+
[Ref.: #119414]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE, API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7995]	18186	+	+	-	-	-	-	-	-	+	-	-	+/-	+	-	-	-	-	-	+/-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #7995]	23499	+	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	-	+	+	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119414]	402	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	+	-	+	+	+	+	+	+	-	-	-	-	-	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	+	-	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	-	-	-	+	-	+	+	+	+	+	+	+	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119414]	7513	-	+	+	+	+	+	+	-	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7995]	Sample type/isolated from	human faeces, diarrhoea
[Ref.: #7995]	Geographic location (country and/or sea, region)	Dacca
[Ref.: #7995]	Country	Bangladesh
[Ref.: #7995]	Country ISO 3 Code	BGD
[Ref.: #7995]	Continent	Asia
[Ref.: #7995]	Geographic location	23.7104°/90.4074°

[Ref.: #67770]	Sample type/isolated from	Human feces
[Ref.: #67770]	Geographic location (country and/or sea, region)	Dacca
[Ref.: #67770]	Country	Bangladesh
[Ref.: #67770]	Country ISO 3 Code	BGD
[Ref.: #67770]	Continent	Asia

[Ref.: #119414]	Sample type/isolated from	Human, Feces
[Ref.: #119414]	Geographic location (country and/or sea, region)	Dhaka
[Ref.: #119414]	Country	Bangladesh
[Ref.: #119414]	Country ISO 3 Code	BGD
[Ref.: #119414]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC050178 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	1720
Soil Samples	168
Animal Samples	1806
Plant Samples	124
Total Samples	3818

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7995]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119414]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7995]	V.fluvialis (ATCC 33809T) gene for 16S ribosomal RNA	X74703	1457	ENA	676 tax ID
[Ref.: #67770]	Vibrio fluvialis gene for 16S ribosomal RNA, partial cds, strain: JCM 1281	LC050178	1475	ENA	676 tax ID
[Ref.: #20218]	Vibrio fluvialis strain NCTC 11327 clone XMYP7 16S ribosomal RNA gene, partial sequence	JX009143	1291	ENA	676 tax ID	*
[Ref.: #20218]	Vibrio fluvialis DNA, 16S-23S rRNA intergenic spacer and 23S rRNA, partial sequence, strain: IAM 14403	AB255719	256	ENA	676 tax ID	*
[Ref.: #20218]	V.fluvialis (NCTC 11327 T) 16S rRNA gene	X76335	1537	ENA	676 tax ID	*
[Ref.: #20218]	Vibrio fluvialis strain ATCC 33809 16S ribosomal RNA gene, partial sequence	GU048832	460	ENA	676 tax ID	*
[Ref.: #20218]	Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence	AF413005	482	ENA	676 tax ID	*
[Ref.: #20218]	Vibrio fluvialis 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu and tRNA-Val genes, complete sequence	AF413006	679	ENA	676 tax ID	*
[Ref.: #20218]	Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu, tRNA-Ala, and tRNA-Val genes, complete sequence	AF413007	710	ENA	676 tax ID	*
[Ref.: #20218]	Vibrio fluvialis strain ATCC 33809 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence	AF413008	557	ENA	676 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Vibrio fluvialis NBRC 103150	GCA_001598835	contig	GenBank	1219074 tax ID
[Ref.: #67770]	Vibrio fluvialis NCTC 11327	GCA_001890655	scaffold	GenBank	676 tax ID
[Ref.: #67770]	Vibrio fluvialis NCTC11327	GCA_900460245	contig	GenBank	676 tax ID
[Ref.: #66792]	Vibrio fluvialis strain ATCC 33809	676.24	complete	PATRIC	676 tax ID	*
[Ref.: #66792]	Vibrio fluvialis strain NCTC11327	676.75	wgs	PATRIC	676 tax ID	*
[Ref.: #66792]	Vibrio fluvialis ATCC 33809	2718218390	complete	JGI IMG/M	676 tax ID	*

[Ref.: #67770]

GC-content

50 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vibrio fluvialis ATCC 33809 NCBI: GCA_001558415.2
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio fluvialis ATCC 33809 NCBI: GCA_001558415.1
[Ref.: #69480]	flagellated	yes	90.574	no
[Ref.: #69480]	gram-positive	no	98.87	no
[Ref.: #69480]	anaerobic	no	97.724	no
[Ref.: #69480]	aerobic	yes	84.613	no
[Ref.: #69480]	halophile	no	54.622	no
[Ref.: #69480]	spore-forming	no	94.788	no
[Ref.: #69480]	thermophile	no	99.403	yes
[Ref.: #69480]	glucose-util	yes	91.639	no
[Ref.: #69480]	motile	yes	91.933	no
[Ref.: #69480]	glucose-ferment	yes	88.213	no
[Ref.: #69480]	flagellated	yes	90.574	no
[Ref.: #69480]	gram-positive	no	98.87	no
[Ref.: #69480]	anaerobic	no	97.724	no
[Ref.: #69480]	aerobic	yes	84.613	no
[Ref.: #69480]	halophile	no	54.622	no
[Ref.: #69480]	spore-forming	no	94.788	no
[Ref.: #69480]	thermophile	no	99.403	yes
[Ref.: #69480]	glucose-util	yes	91.639	no
[Ref.: #69480]	motile	yes	91.933	no
[Ref.: #69480]	glucose-ferment	yes	88.213	no

Availability in culture collections External links

[Ref.: #7995]

Culture collection no.

DSM 19283, ATCC 33809, CCM 3689, CCTM La 3552, CCUG 13622, CDC 9555-78, IAM 14403, JCM 3752, LMG 7894, NCIMB 2249, NCTC 11327, WDCM 00137, JCM 1281, BCRC 12830, CAIM 593, CCUG 15268, CCUG 20252, CDC 9555-18, CECT 4217, CGMCC 1.1608, CIP 103355, KCTC 2473, NBRC 103150, NRIC 0818

[Ref.: #86321]

SI-ID 389395

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio sinensis sp. nov. and Vibrio viridaestus sp. nov., two marine bacteria isolated from the East China Sea.	Li Y, Liang J, Liu R, Xue CX, Zhou S, He X, Li B, Wang X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003842	2020	*
Enzymology	High Hydrostatic Pressure Inducible Trimethylamine N-Oxide Reductase Improves the Pressure Tolerance of Piezosensitive Bacteria Vibrio fluvialis.	Yin QJ, Zhang WJ, Qi XQ, Zhang SD, Jiang T, Li XG, Chen Y, Santini CL, Zhou H, Chou IM, Wu LF	Front Microbiol	10.3389/fmicb.2017.02646	2018	*
Phylogeny	Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).	Rameshkumar N, Fukui Y, Sawabe T, Nair S	Int J Syst Evol Microbiol	10.1099/ijs.0.65604-0	2008	*
Phylogeny	Vibrio ostreae sp. nov., a novel gut bacterium isolated from a Yellow Sea oyster.	Muhammad N, Nguyen TTH, Lee YJ, Ko J, Avila F, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.005586	2022	*

References

#7995

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19283

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41864 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86321

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389395.1 )

#119414 Collection of Institut Pasteur ; Curators of the CIP; CIP 103355
* These data were automatically processed and therefore are not curated

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Vibrio fluvialis ATCC 33809

Vibrio fluvialis ATCC 33809

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