Vibrio cincinnatiensis DSM 19608 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from blood and cerebrospinal fluid from patient with bacteremia and meningitis.
Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order "Vibrionales" |
| Family Vibrionaceae |
| Genus Vibrio |
| Species Vibrio cincinnatiensis |
| Full scientific name Vibrio cincinnatiensis Brayton et al. 1986 |
| BacDive ID | Other strains from Vibrio cincinnatiensis (2) | Type strain |
|---|---|---|
| 130756 | V. cincinnatiensis CH 1327, DSM 12899 | |
| 145960 | V. cincinnatiensis CCUG 29962 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8125 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 8125 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 8125 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 34554 | Marine agar (MA) | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |||
| 118284 | CIP Medium 13 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 118284 | 16947 ChEBI | citrate | + | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | fermentation | from API 20NE |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68369 | 16899 ChEBI | D-mannitol | + | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68369 | 4853 ChEBI | esculin | + | hydrolysis | from API 20NE |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 118284 | 17234 ChEBI | glucose | + | fermentation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | + | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68369 | 30849 ChEBI | L-arabinose | + | assimilation | from API 20NE |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 118284 | 17716 ChEBI | lactose | - | fermentation | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68369 | 17306 ChEBI | maltose | + | assimilation | from API 20NE |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | + | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 68369 | 59640 ChEBI | N-acetylglucosamine | + | assimilation | from API 20NE |
| 118284 | 17632 ChEBI | nitrate | + | reduction | |
| 118284 | 17632 ChEBI | nitrate | + | respiration | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 118284 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 118284 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 118284 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 118284 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 118284 | amylase | + | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 118284 | beta-galactosidase | + | 3.2.1.23 | |
| 68369 | beta-glucosidase | + | 3.2.1.21 | from API 20NE |
| 118284 | catalase | + | 1.11.1.6 | |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 118284 | DNase | + | ||
| 118284 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 118284 | lysine decarboxylase | + | 4.1.1.18 | |
| 118284 | ornithine decarboxylase | - | 4.1.1.17 | |
| 118284 | oxidase | + | ||
| 118284 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118284 | not determinedn.d. | + | - | - | + | + | + | - | - | - | + | + | + | +/- | - | - | - | + | + | - | - | - | + | - | + | + | + | + | + | - | - | + | + | - | - | - | + | + | - | - | + | - | - | - | - | - | - | + | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Disease | #Meningitis | |
| #Infection | #Patient | - | |
| #Host Body Product | #Fluids | #Blood | |
| #Host Body Product | #Fluids | #Cerebrospinal fluid |
Global distribution of 16S sequence X74698 (>99% sequence identity) for Vibrio cincinnatiensis subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 34500_B01 assembly for Vibrio cincinnatiensis NCTC12012 | contig | 675 | 75.63 | ||||
| 66792 | IMG-taxon 2568526007 annotated assembly for Vibrio cincinnatiensis DSM 19608 | scaffold | 1123491 | 64.56 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 8125 | V.cincinnatiensis (ATCC 35912T) gene for 16S ribosomal RNA | X74698 | 1456 | 675 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.50 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 77.70 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.87 | yes |
| 125438 | aerobic | aerobicⓘ | no | 72.40 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 92.59 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 89.14 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Outer membrane vesicles produced by coral-associated Vibrio coralliilyticus inhibit bacteriophage infection and its ecological implications. | Li J, Guo A, Huang S, Azam F, Sun X, Zhang J, Long L, Zhang S. | Microbiol Res | 10.1016/j.micres.2024.127607 | 2024 | ||
| Genetics | Comparative Genomic Analysis of Vibrio cincinnatiensis Provides Insights into Genetic Diversity, Evolutionary Dynamics, and Pathogenic Traits of the Species. | Du Y, Jin Y, Li B, Yue J, Yin Z. | Int J Mol Sci | 10.3390/ijms23094520 | 2022 | |
| Complete xylan utilization pathway and regulation mechanisms involved in marine algae degradation by cosmopolitan marine and human gut microbiota. | Sun HN, Chen XL, Wang Y, Zhu YP, Teng ZJ, Cao HY, Xu TT, Chen Y, Zhang YZ, Zhao F. | ISME J | 10.1093/ismejo/wraf085 | 2025 | ||
| Outer Membrane Vesicle Production by Escherichia coli Enhances Its Defense against Phage Infection. | Xuan G, Lu D, Lin H, Wang Y, Wang J. | Microorganisms | 10.3390/microorganisms12091836 | 2024 | ||
| Genetics | Complete genome sequence of a giant Vibrio bacteriophage VH7D. | Luo ZH, Yu YP, Jost G, Xu W, Huang XL. | Mar Genomics | 10.1016/j.margen.2015.10.005 | 2015 | |
| Evaluation of the Biological Activities of Peptides from Epidermal Mucus of Marine Fish Species from Chilean Aquaculture. | Alvarez CA, Toro-Araneda T, Cumillaf JP, Vega B, Tapia MJ, Roman T, Cardenas C, Cordova-Alarcon V, Jara-Gutierrez C, Santana PA, Guzman F. | Mar Drugs | 10.3390/md22060248 | 2024 | ||
| Metabolism | In silico prospection of microorganisms to produce polyhydroxyalkanoate from whey: Caulobacter segnis DSM 29236 as a suitable industrial strain. | Bustamante D, Segarra S, Tortajada M, Ramon D, Del Cerro C, Auxiliadora Prieto M, Iglesias JR, Rojas A. | Microb Biotechnol | 10.1111/1751-7915.13371 | 2019 | |
| The effect of marination on lactic acid bacteria communities in raw broiler fillet strips. | Nieminen TT, Valitalo H, Sade E, Paloranta A, Koskinen K, Bjorkroth J. | Front Microbiol | 10.3389/fmicb.2012.00376 | 2012 | ||
| Metabolism | Nitrogen fixation by Vibrio parahaemolyticus and its implications for a new ecological niche. | Criminger JD, Hazen TH, Sobecky PA, Lovell CR. | Appl Environ Microbiol | 10.1128/aem.00981-07 | 2007 | |
| Phylogeny | Analysis of gyrB and toxR gene sequences of Vibrio hollisae and development of gyrB- and toxR-targeted PCR methods for isolation of V. hollisae from the environment and its identification. | Vuddhakul V, Nakai T, Matsumoto C, Oh T, Nishino T, Chen CH, Nishibuchi M, Okuda J. | Appl Environ Microbiol | 10.1128/aem.66.8.3506-3514.2000 | 2000 | |
| Enzymology | Development of a toxR-based loop-mediated isothermal amplification assay for detecting Vibrio parahaemolyticus. | Chen S, Ge B. | BMC Microbiol | 10.1186/1471-2180-10-41 | 2010 | |
| Metabolism | Rapid detection of viable salmonellae in produce by coupling propidium monoazide with loop-mediated isothermal amplification. | Chen S, Wang F, Beaulieu JC, Stein RE, Ge B. | Appl Environ Microbiol | 10.1128/aem.00354-11 | 2011 | |
| Biotechnology | Comparison of a fluorogenic assay with a conventional method for rapid detection of Vibrio parahaemolyticus in seafoods. | Venkateswaran K, Kurusu T, Satake M, Shinoda S. | Appl Environ Microbiol | 10.1128/aem.62.9.3516-3520.1996 | 1996 | |
| Compilation of 5S rRNA and 5S rRNA gene sequences. | Specht T, Wolters J, Erdmann VA. | Nucleic Acids Res | 10.1093/nar/18.suppl.2215 | 1990 | ||
| Phenotypic and Genotypic Characterization of Veterinary Vibrio cincinnatiensis Isolates. | Jackel C, Hammerl JA, Arslan HH, Gollner C, Vom Ort N, Taureck K, Strauch E | Microorganisms | 10.3390/microorganisms8050739 | 2020 | ||
| Phylogeny | Vibrio cincinnatiensis sp. nov., a new human pathogen. | Brayton PR, Bode RB, Colwell RR, MacDonell MT, Hall HL, Grimes DJ, West PA, Bryant TN. | J Clin Microbiol | 10.1128/jcm.23.1.104-108.1986 | 1986 |
| #8125 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19608 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #34554 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68369 | Automatically annotated from API 20NE . |
| #68371 | Automatically annotated from API 50CH acid . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118284 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104173 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive17320.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data