Name: Vibrio parahaemolyticus Truro 70
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17268

Type strain:

Species: Vibrio parahaemolyticus

Strain Designation: Truro 70

Culture col. no.: DSM 11058, ATCC 43996, NCTC 10884

Strain history: <- NCTC <- G. I. Barrow; Truro 70

NCBI tax ID(s): 670 (species)

SI-ID 45182

ATCC 43996, NCTC 10884, DSM 11058, CECT 5271, ACM 3913

Other strains from Vibrio parahaemolyticus

Section

Vibrio parahaemolyticus Truro 70 is a mesophilic, motile bacterium that was isolated from cockles causing food poisoning.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio parahaemolyticus**
	Full Scientific Name (LPSN)	Vibrio parahaemolyticus (Fujino et al. 1951) Sakazaki et al. 1963 (Approved Lists 1980)

	Synonym	"Pasteurella* parahaemolytica"*
	Synonym	Beneckea parahaemolytica

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.974

[Ref.: #69480]	Motility	yes Confidence in %95.112

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4177]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #4177]

Culture medium growth

[Ref.: #4177]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4177]

Culture medium composition

expand / minimize

[Ref.: #4177]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #4177]

Culture medium growth

[Ref.: #4177]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4177]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4177]			growth	28 °C

[Ref.: #4177]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.86

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE, API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68369]	indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68369]		indole ChEBI		+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE, API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE, API 20E
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE, API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #4177]	17808	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #4177]	16651	-	-	+	+	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #4177]	23467	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	-	+	-	-	+
[Ref.: #4177]	23458	+	+	-	-	-	-	+	+	+	+	+	+	+	+	+	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4177]	Sample type/isolated from	cockles causing food poisoning
[Ref.: #4177]	Geographic location (country and/or sea, region)	Cornwall
[Ref.: #4177]	Country	United Kingdom
[Ref.: #4177]	Country ISO 3 Code	GBR
[Ref.: #4177]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM007587 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	3075
Soil Samples	169
Animal Samples	1856
Plant Samples	64
Total Samples	5164

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4177]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Vibrio parahaemolyticus strain ATCC 43996 16S ribosomal RNA (rrs) gene, partial sequence	EU155487	890	ENA	670 tax ID	*
[Ref.: #20218]	Vibrio parahaemolyticus strain DSM 11058 16S ribosomal RNA gene, partial sequence	HM007587	1351	ENA	670 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio parahaemolyticus NCTC10884	GCA_900460415	contig	GenBank	670 tax ID	*
[Ref.: #66792]	Vibrio parahaemolyticus strain NCTC10884	670.1461	wgs	PATRIC	670 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vibrio parahaemolyticus strain NCTC10884 PATRIC: 670.1461
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio parahaemolyticus strain NCTC10884 PATRIC: 670.1461
[Ref.: #69480]	gram-positive	no	98.596	no
[Ref.: #69480]	anaerobic	no	97.751	no
[Ref.: #69480]	halophile	yes	52.152	no
[Ref.: #69480]	spore-forming	no	92.669	no
[Ref.: #69480]	glucose-util	yes	90.482	yes
[Ref.: #69480]	flagellated	yes	91.731	no
[Ref.: #69480]	thermophile	no	99.554	yes
[Ref.: #69480]	motile	yes	92.705	no
[Ref.: #69480]	aerobic	yes	89.984	no
[Ref.: #69480]	glucose-ferment	yes	89.306	no

Availability in culture collections External links

[Ref.: #4177]

Culture collection no.

DSM 11058, ATCC 43996, NCTC 10884

[Ref.: #86267]

SI-ID 45182

Literature:

	Title	Authors	Journal	DOI	Year
Biotechnology	Influence of growth conditions on pressure resistance of Vibrio parahaemolyticus in oysters and the optimization of postpressure treatment recovery conditions.	Ye M, Huang Y, Neetoo H, Shearer AE, Chen H	J Food Prot	10.4315/0362-028X.JFP-10-521	2011	*
Cultivation	Retention of virulence in viable but non-culturable halophilic Vibrio spp.	Baffone W, Citterio B, Vittoria E, Casaroli A, Campana R, Falzano L, Donelli G	Int J Food Microbiol	10.1016/s0168-1605(03)00102-8	2003	*
	Development of a rapid PCR protocol to detect Vibrio parahaemolyticus in clams.	Federici S, Serrazanetti DI, Guerzoni ME, Campana R, Ciandrini E, Baffone W, Gianotti A	J Food Sci Technol	10.1007/s13197-017-2986-9	2017	*
	Responses of Mytilus galloprovincialis hemocytes to environmental strains of Vibrio parahaemolyticus, Vibrio alginolyticus, Vibrio vulnificus.	Ciacci C, Manti A, Canonico B, Campana R, Camisassi G, Baffone W, Canesi L	Fish Shellfish Immunol	10.1016/j.fsi.2017.04.002	2017	*

References

#4177

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11058

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86267

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45182.1 )

* These data were automatically processed and therefore are not curated

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Vibrio parahaemolyticus strain NCTC10884

Vibrio parahaemolyticus strain NCTC10884

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