Vibrio parahaemolyticus CIP 110006 is a facultative anaerobe, Gram-negative, motile bacterium of the family Vibrionaceae.
Gram-negative motile rod-shaped facultative anaerobe genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order "Vibrionales" |
| Family Vibrionaceae |
| Genus Vibrio |
| Species Vibrio parahaemolyticus |
| Full scientific name Vibrio parahaemolyticus (Fujino et al. 1951) Sakazaki et al. 1963 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 41731 | Marine agar (MA) | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |||
| 41731 | CIP Medium 13 | Medium recipe at CIP |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 41731 | positive | growth | 30 |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 96.793 |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 41731 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 124043 | ASM127094v1 assembly for Vibrio parahaemolyticus RIMD 2210633 | scaffold | 670 | 42.77 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Stress | Thermal Resistance of Listeria monocytogenes and Vibrio parahaemolyticus in Lab Media and Brown Crab (Cancer pagurus) Meat. | Dong D, Pedros-Garrido S, Boyd A, Hurley D, Lyng JG. | J Food Prot | 10.1016/j.jfp.2025.100601 | 2025 | |
| Evaluating the Antimicrobial Efficacy of Citral Nano-Emulsion Against Vibrio parahaemolyticus. | Cao J, Zhang X, Qi Z, Liu H. | Foods | 10.3390/foods14183272 | 2025 | ||
| Genetics | High genomic diversity of Vibrio parahaemolyticus from underexplored tropical northern Australia: a baseline for future surveillance. | Kaestli M, Gibb K, Hedges CE, Padovan A. | Microb Genom | 10.1099/mgen.0.001536 | 2025 | |
| The complete genome of Vibrio diabolicus isolated from coastal waters and Pacific oysters in England. | Ryder D, Adaway M, Batista FM, Wagley S, Powell A. | Microbiol Resour Announc | 10.1128/mra.01318-24 | 2025 | ||
| Bile acids activate the antibacterial T6SS1 in the gut pathogen Vibrio parahaemolyticus. | Schiffmann S, Mass S, Salomon D. | Microbiol Spectr | 10.1128/spectrum.01181-24 | 2024 | ||
| Genetics | Complete genome sequences of Vibrio parahaemolyticus strains L2171 and L2181 associated with AHPND in Penaeus vannamei postlarvae by hybrid sequencing. | Reyes G, Andrade B, Betancourt I, Bayot B. | Data Brief | 10.1016/j.dib.2025.111819 | 2025 | |
| Genetics | Genomic Insights into an Environmental Vibrio parahaemolyticus Biofilm Isolate: Deciphering Alternative Resistance Mechanisms and Mobilizable Genetic Elements. | Liu H, Dong Y, Lin Z, Habimana O. | Antibiotics (Basel) | 10.3390/antibiotics14101005 | 2025 | |
| Phylogeny | Epidemiological and Genomic analysis of Vibrio parahaemolyticus isolated from imported travelers at the port of Shanghai, China (2017-2019). | Liu D, Zhou L, Zhang Z, Zhang Y, Wang Z, Li S, Zhu Y, Zheng H, Zhang Z, Tian Z. | BMC Microbiol | 10.1186/s12866-024-03303-7 | 2024 | |
| Pathogenicity | Predator-Prey Interactions between Halobacteriovorax and Pathogenic Vibrio parahaemolyticus Strains: Geographical Considerations and Influence of Vibrio Hemolysins. | Richards GP, Watson MA, Williams HN, Jones JL. | Microbiol Spectr | 10.1128/spectrum.02353-23 | 2023 | |
| Fitness and transcriptomic analysis of pathogenic Vibrio parahaemolyticus in seawater at different shellfish harvesting temperatures. | Liu Z, Liao C, Wang L. | Microbiol Spectr | 10.1128/spectrum.02783-23 | 2023 | ||
| Superoxide dismutase VPA1514 in Vibrio parahaemolyticus protects against environmental stresses | Hsu P, Wong H, Tang C. | PLoS One | 2025 | |||
| A conserved cell-pole determinant organizes proper polar flagellum formation. | Arroyo-Perez EE, Hook JC, Alvarado A, Wimmi S, Glatter T, Thormann K, Ringgaard S. | Elife | 10.7554/elife.93004 | 2024 | ||
| Genomic analysis of Vibrio harveyi strain PH1009, a potential multi-drug resistant pathogen due to acquisition of toxin genes. | De Mesa CA, Mendoza RM, Penir SMU, de la Pena LD, Amar EC, Saloma CP. | Heliyon | 10.1016/j.heliyon.2023.e14926 | 2023 | ||
| Pathogenicity | Exaiptasia pallida Infection Model Reveals the Critical Role of Vibrio parahaemolyticus T3SS Virulence Factors in Its Pathogenicity for Sea Anemones. | Perrone A, Bonnet E, Soone A, Boyer L, Seneca F. | Toxins (Basel) | 10.3390/toxins17040175 | 2025 | |
| Vibrio parahaemolyticus T6SS2 effector repertoires. | Tchelet D, Keppel K, Bosis E, Salomon D. | Gut Microbes | 10.1080/19490976.2023.2178795 | 2023 | ||
| Genetics | Comparative pan-genomic analysis reveals pathogenic mechanisms and genomic plasticity in Vibrio parahaemolyticus clinical and environmental isolates. | Zhang P, Wu X, Ji L, Yan W, Chen L, Dong F. | Front Cell Infect Microbiol | 10.3389/fcimb.2025.1574627 | 2025 | |
| Genetics | Screening of Potential Drug Targets Based on the Genome-Scale Metabolic Network Model of Vibrio parahaemolyticus. | Zhang L, Wang B, Zhang R, He Z, Zhang M, Hao T, Sun J. | Curr Issues Mol Biol | 10.3390/cimb47070575 | 2025 | |
| Role of the TPR family protein VPA1365 in regulating type III secretion system 2 and virulence in Vibrio parahaemolyticus. | Yin W, Wan M, Zhang Y, Meng H, Pan Z, Jiao X, Gu D. | Appl Environ Microbiol | 10.1128/aem.02201-24 | 2025 | ||
| Genomic and Pathological Characterization of Acute Hepatopancreatic Necrosis Disease (AHPND)-Associated Natural Mutant Vibrio parahaemolyticus Isolated from Penaeus vannamei Cultured in Korea. | Kim YB, Park SY, Jeon HJ, Kim B, Kwon MG, Kim SM, Han JE, Kim JH. | Animals (Basel) | 10.3390/ani14192788 | 2024 | ||
| Identifying gene-level mechanisms of successful dispersal of Vibrio parahaemolyticus during El Niño events. | Campbell AM, Gavilan RG, Hauton C, van Aerle R, Martinez-Urtaza J. | Microb Genom | 10.1099/mgen.0.001317 | 2024 | ||
| The DmeRF System Is Involved in Maintaining Cobalt Homeostasis in Vibrio parahaemolyticus. | Zhao Y, Kong M, Yang J, Zhao X, Shi Y, Zhai Y, Qiu J, Zheng C. | Int J Mol Sci | 10.3390/ijms24010414 | 2022 | ||
| ArcB orchestrates the quorum-sensing system to regulate type III secretion system 1 in Vibrio parahaemolyticus. | Zhang C, Liu M, Wu Y, Li X, Zhang C, Call DR, Liu M, Zhao Z. | Gut Microbes | 10.1080/19490976.2023.2281016 | 2023 | ||
| Draft Genome Sequence of Vibrio parahaemolyticus PSU5579, Isolated during an Outbreak of Acute Hepatopancreatic Necrosis Disease in Thailand. | LaPorte JP, Spinard EJ, Cavanagh D, Gomez-Chiarri M, Rowley DC, Mekalanos JJ, Mittraparp-Arthorn P, Nelson DR. | Microbiol Resour Announc | 10.1128/mra.00873-22 | 2023 | ||
| The RIX domain defines a class of polymorphic T6SS effectors and secreted adaptors. | Kanarek K, Fridman CM, Bosis E, Salomon D. | Nat Commun | 10.1038/s41467-023-40659-2 | 2023 | ||
| A DNase Type VI Secretion System Effector Requires Its MIX Domain for Secretion. | Fridman CM, Jana B, Ben-Yaakov R, Bosis E, Salomon D. | Microbiol Spectr | 10.1128/spectrum.02465-22 | 2022 | ||
| MtlA gene sequencing based on 3rd -generation sequencing for Vibrio typing | Zhou R, Qi Y, Zhou L, Liu D, Zou Y, Xian T, Zhang Z, Hu H, Zheng H. | BMC Microbiol | 2025 | |||
| Wild rice-associated Vibrio promotes plant growth and exhibits genomic and phenotypic plasticity for plant adaptations. | Kulanthaivel K, Rameshkumar N. | mSystems | 10.1128/msystems.00910-25 | 2025 | ||
| Phenotype | TssL2 of T6SS2 is required for mobility, biofilm formation, wrinkly phenotype formation, and virulence of Vibrio parahaemolyticus SH112. | Bai XR, Liu PX, Wang WC, Jin YH, Wang Q, Qi Y, Zhang XY, Sun WD, Fang WH, Han XG, Jiang W. | Appl Microbiol Biotechnol | 10.1007/s00253-024-13351-8 | 2024 | |
| In Silico Approach Gives Insights into Ig-like Fold Containing Proteins in Vibrio parahaemolyticus: A Focus on the Fibrillar Adhesins. | Wang D, Wang H. | Toxins (Basel) | 10.3390/toxins14020133 | 2022 | ||
| Genetics | Comparative genomics uncovered differences between clinical and environmental populations of Vibrio parahaemolyticus in New Zealand. | Vasey J, Jones D, Deng CH, Hedderley D, Martinez-Urtaza J, Powell A, Wang J, Wright J, Merien AP, Fletcher GC, Vidovic S. | Microb Genom | 10.1099/mgen.0.001037 | 2023 | |
| Transcriptomic Analysis of Vibrio parahaemolyticus Underlying the Wrinkly and Smooth Phenotypes. | Wu Q, Li X, Zhang T, Zhang M, Xue X, Yang W, Hu L, Yin Z, Zhou D, Sun Y, Lu R, Zhang Y. | Microbiol Spectr | 10.1128/spectrum.02188-22 | 2022 | ||
| Ultrasound combined with FeSO4 facilitated the occurrence of ferroptosis in Vibrio parahaemolyticus. | Peng S, Yao L, Zhu X, Ge W, Deng J, Li H, Xu D, Hu L, Mo H. | Ultrason Sonochem | 10.1016/j.ultsonch.2024.107080 | 2024 | ||
| Antimicrobial Activity and Mechanisms of Punicalagin against Vibrio parahaemolyticus. | Liu H, Zhu W, Zou Y, Xia X. | Foods | 10.3390/foods13091366 | 2024 | ||
| Multiple T6SSs, Mobile Auxiliary Modules, and Effectors Revealed in a Systematic Analysis of the Vibrio parahaemolyticus Pan-Genome. | Jana B, Keppel K, Fridman CM, Bosis E, Salomon D. | mSystems | 10.1128/msystems.00723-22 | 2022 | ||
| Natural Inhibitors Targeting the Localization of Lipoprotein System in Vibrio parahaemolyticus. | Liu J, Tong J, Wu Q, Liu J, Yuan M, Tian C, Xu H, Malakar PK, Pan Y, Zhao Y, Zhang Z. | Int J Mol Sci | 10.3390/ijms232214352 | 2022 | ||
| Pronucleotide Probes Reveal a Diverging Specificity for AMPylation vs UMPylation of Human and Bacterial Nucleotide Transferases. | Mostert D, Bubeneck WA, Rauh T, Kielkowski P, Itzen A, Jung K, Sieber SA. | Biochemistry | 10.1021/acs.biochem.3c00568 | 2024 | ||
| A robust CRISPR interference gene repression system in Vibrio parahaemolyticus. | Jiang T, Li Y, Hong W, Lin M. | Arch Microbiol | 10.1007/s00203-023-03770-y | 2023 | ||
| Genetics | Vibrio parahaemolyticus from Migratory Birds in China Carries an Extra Copy of tRNA-Gly and Plasmid-Mediated Quinolone Resistance Gene qnrD. | Zheng L, Yang C, Chen P, Zhu L, Wen H, Liu M, Guan J, Lu G, Jing J, Sun S, Wang Y, Song Y, Yang R, Zhang X, Cui Y, Guo X. | Microbiol Spectr | 10.1128/spectrum.02170-22 | 2023 | |
| Functional genomics of chitin degradation by Vibrio parahaemolyticus reveals finely integrated metabolic contributions to support environmental fitness. | Getz LJ, Robinson OS, Thomas NA. | PLoS Genet | 10.1371/journal.pgen.1011370 | 2025 | ||
| The two-component system TtrRS boosts Vibrio parahaemolyticus colonization by exploiting sulfur compounds in host gut. | Zhong X, Liu F, Liang T, Lu R, Shi M, Zhou X, Yang M. | PLoS Pathog | 10.1371/journal.ppat.1012410 | 2024 | ||
| Enzymology | Cloning, sequencing, and characterizing of soil antibiotic active-producing Streptomyces species-specific DNA markers. | Saadoun I, Mahasneh A, Odat JD, Al-Joubori B, Elsheikh E. | Saudi J Biol Sci | 10.1016/j.sjbs.2023.103854 | 2023 | |
| Phylogeny | Evolutionary dynamics of the successful expansion of pandemic Vibrio parahaemolyticus ST3 in Latin America. | Campbell AM, Gavilan RG, Abanto Marin M, Yang C, Hauton C, van Aerle R, Martinez-Urtaza J. | Nat Commun | 10.1038/s41467-024-52159-y | 2024 | |
| Ultrasound-assisted blue light killing Vibrio parahaemolyticus to improve salmon preservation. | Zhu X, Yan H, Cui Z, Li H, Zhou W, Liu Z, Zhang H, Manoli T, Mo H, Hu L. | Ultrason Sonochem | 10.1016/j.ultsonch.2023.106389 | 2023 | ||
| Environmental magnesium ion affects global gene expression, motility, biofilm formation and virulence of Vibrio parahaemolyticus. | Li X, Zhang X, Zhang M, Luo X, Zhang T, Liu X, Lu R, Zhang Y. | Biofilm | 10.1016/j.bioflm.2024.100194 | 2024 | ||
| Development of a Controlled Laboratory-scale Inoculation System to Study Vibrio parahaemolyticus-oyster Interactions. | Hines IS, Smith SA, Kuhn DD, Stevens AM. | FEMS Microbiol Lett | 10.1093/femsle/fnac055 | 2022 | ||
| Transcriptome | Gene Regulatory Network of the Noncoding RNA Qrr5 Involved in the Cytotoxicity of Vibrio parahaemolyticus during Infection. | Zha F, Pang R, Huang S, Zhang J, Wang J, Chen M, Xue L, Ye Q, Wu S, Yang M, Gu Q, Ding Y, Zhang H, Wu Q. | Microorganisms | 10.3390/microorganisms10102084 | 2022 | |
| A conserved chaperone protein is required for the formation of a noncanonical type VI secretion system spike tip complex. | Sachar K, Kanarek K, Colautti J, Kim Y, Bosis E, Prehna G, Salomon D, Whitney JC. | J Biol Chem | 10.1016/j.jbc.2025.108242 | 2025 | ||
| A binary effector module secreted by a type VI secretion system. | Dar Y, Jana B, Bosis E, Salomon D. | EMBO Rep | 10.15252/embr.202153981 | 2022 | ||
| Characterization and Analysis of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in Pandemic and Non-Pandemic Vibrio parahaemolyticus Isolates from Seafood Sources. | Jingjit N, Preeprem S, Surachat K, Mittraparp-Arthorn P. | Microorganisms | 10.3390/microorganisms9061220 | 2021 | ||
| Transcriptomic analyses of Vibrio parahaemolyticus under the phenyllactic acid stress. | Lin Y, Fang M, Liu J, Zhang Y, Yu Y. | Appl Microbiol Biotechnol | 10.1007/s00253-024-13024-6 | 2024 | ||
| Phylogenomic Analysis Supports Two Possible Origins for Latin American Strains of Vibrio parahaemolyticus Associated with Acute Hepatopancreatic Necrosis Disease (AHPND). | Gonzalez-Gomez JP, Soto-Rodriguez S, Lopez-Cuevas O, Castro-Del Campo N, Chaidez C, Gomez-Gil B. | Curr Microbiol | 10.1007/s00284-020-02214-w | 2020 | ||
| Genetics | Genomic and Evolutionary Features of Nine AHPND Positive Vibrio parahaemolyticus Strains Isolated from South American Shrimp Farms. | Castellanos A, Restrepo L, Bajana L, Betancourt I, Bayot B, Reyes A. | Microbiol Spectr | 10.1128/spectrum.04851-22 | 2023 | |
| Genetics | Insights into virulence: structure classification of the Vibrio parahaemolyticus RIMD mobilome. | Kinch LN, Schaeffer RD, Zhang J, Cong Q, Orth K, Grishin N. | mSystems | 10.1128/msystems.00796-23 | 2023 | |
| Genetics | Anti-Vibrio parahaemolyticus compounds from Streptomyces parvus based on Pan-genome and subtractive proteomics. | Liu W, Ou P, Tian F, Liao J, Ma Y, Wang J, Jin X. | Front Microbiol | 10.3389/fmicb.2023.1218176 | 2023 | |
| A Novel Transcription Factor VPA0041 Was Identified to Regulate the Swarming Motility in Vibrio parahaemolyticus. | Li M, Meng H, Li Y, Gu D. | Pathogens | 10.3390/pathogens11040453 | 2022 | ||
| ECOD: integrating classifications of protein domains from experimental and predicted structures. | Schaeffer RD, Medvedev KE, Andreeva A, Chuguransky SR, Pinto BL, Zhang J, Cong Q, Bateman A, Grishin NV. | Nucleic Acids Res | 10.1093/nar/gkae1029 | 2025 | ||
| Identification of novel drug targets for Helicobacter pylori: structure-based virtual screening of potential inhibitors against DAH7PS protein involved in the shikimate pathway. | Noori Goodarzi N, Khazani Asforooshani M, Shahbazi B, Rezaie Rahimi N, Badmasti F. | Front Bioinform | 10.3389/fbinf.2024.1482338 | 2024 | ||
| Incidence, genetic diversity, and antimicrobial resistance profiles of Vibrio parahaemolyticus in seafood in Bangkok and eastern Thailand. | Changsen C, Likhitrattanapisal S, Lunha K, Chumpol W, Jiemsup S, Prachumwat A, Kongkasuriyachai D, Ingsriswang S, Chaturongakul S, Lamalee A, Yongkiettrakul S, Buates S. | PeerJ | 10.7717/peerj.15283 | 2023 | ||
| Engineering a customizable antibacterial T6SS-based platform in Vibrio natriegens. | Jana B, Keppel K, Salomon D. | EMBO Rep | 10.15252/embr.202153681 | 2021 | ||
| Defence systems encoded by core genomic islands of seventh pandemic Vibrio cholerae. | Blokesch M. | Philos Trans R Soc Lond B Biol Sci | 10.1098/rstb.2024.0083 | 2025 | ||
| Proteome | Identification of Vibrio parahaemolyticus and Vibrio spp. Specific Outer Membrane Proteins by Reverse Vaccinology and Surface Proteome. | Wang W, Liu J, Guo S, Liu L, Yuan Q, Guo L, Pan S. | Front Microbiol | 10.3389/fmicb.2020.625315 | 2020 | |
| Phylogeny | Refinement and curation of homologous groups facilitated by structure prediction. | Schaeffer RD, Pei J, Zhang J, Cong Q, Grishin NV. | Protein Sci | 10.1002/pro.70074 | 2025 | |
| Genetics | Genomic and Transcriptomic Analyses Reveal Multiple Strategies for Vibrio parahaemolyticus to Tolerate Sub-Lethal Concentrations of Three Antibiotics. | Yang L, Yu P, Wang J, Zhao T, Zhao Y, Pan Y, Chen L. | Foods | 10.3390/foods13111674 | 2024 | |
| Functional Analysis of Hypothetical Proteins of Vibrio parahaemolyticus Reveals the Presence of Virulence Factors and Growth-Related Enzymes With Therapeutic Potential. | Shahrear S, Afroj Zinnia M, Sany MRU, Islam ABMMK. | Bioinform Biol Insights | 10.1177/11779322221136002 | 2022 | ||
| Combined Therapy of Probiotic Microcapsules and Bomidin in Vibrio parahaemolyticus-Infected Rats. | Zhou T, Liu M, Pan J, Ren J, Tang F, Dai J, Xue F, Ji D. | Life (Basel) | 10.3390/life12111740 | 2022 | ||
| Public health aspects of Vibrio spp. related to the consumption of seafood in the EU. | EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, De Cesare A, Herman L, Hilbert F, Lindqvist R, Nauta M, Nonno R, Peixe L, Ru G, Simmons M, Skandamis P, Baker-Austin C, Hervio-Heath D, Martinez-Urtaza J, Caro ES, Strauch E, Thebault A, Guerra B, Messens W, Simon AC, Barcia-Cruz R, Suffredini E. | EFSA J | 10.2903/j.efsa.2024.8896 | 2024 | ||
| Metabolism | A comparative genomics methodology reveals a widespread family of membrane-disrupting T6SS effectors. | Fridman CM, Keppel K, Gerlic M, Bosis E, Salomon D. | Nat Commun | 10.1038/s41467-020-14951-4 | 2020 | |
| Phylogeny | Phylogenetic Relationship Among Brackishwater Vibrio Species. | Ashok Kumar J, Vinaya Kumar K, Avunje S, Akhil V, Ashok S, Kumar S, Sivamani B, Grover M, Rai A, Alavandi SV, Vijayan KK. | Evol Bioinform Online | 10.1177/1176934320903288 | 2020 | |
| BacTermFinder: a comprehensive and general bacterial terminator finder using a CNN ensemble. | Taheri Ghahfarokhi SMA, Pena-Castillo L. | NAR Genom Bioinform | 10.1093/nargab/lqaf016 | 2025 | ||
| Genetics | Multilocus Sequence Typing and Virulence Potential of Vibrio parahaemolyticus Strains Isolated from Aquatic Bird Feces. | Muangnapoh C, Tamboon E, Supha N, Toyting J, Chitrak A, Kitkumthorn N, Ekchariyawat P, Iida T, Suthienkul O. | Microbiol Spectr | 10.1128/spectrum.00886-22 | 2022 | |
| Comparative Transcriptome Analysis Reveals Regulatory Factors Involved in Vibrio Parahaemolyticus Biofilm Formation. | Wang Q, Wang P, Liu P, Ou J. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.917131 | 2022 | ||
| Transcriptional regulation of the virulence genes and the biofilm formation associated operons in Vibrio parahaemolyticus. | Zhang Y, Qiu Y, Xue X, Zhang M, Sun J, Li X, Hu L, Yin Z, Yang W, Lu R, Zhou D. | Gut Pathog | 10.1186/s13099-021-00410-y | 2021 | ||
| Metabolism | The quorum sensing regulator OpaR is a repressor of polar flagellum genes in Vibrio parahaemolyticus. | Lu R, Sun J, Qiu Y, Zhang M, Xue X, Li X, Yang W, Zhou D, Hu L, Zhang Y. | J Microbiol | 10.1007/s12275-021-0629-3 | 2021 | |
| Genetic Basis of High-Pressure Tolerance of a Vibrio parahaemolyticus Mutant and Its Pathogenicity. | Feng L, Xu M, Zhu J, Lu H. | Front Microbiol | 10.3389/fmicb.2022.827856 | 2022 | ||
| A Novel Gene vp0610 Negatively Regulates Biofilm Formation in Vibrio parahaemolyticus. | Jiang F, Lei T, Wang Z, He M, Zhang J, Wang J, Zeng H, Chen M, Xue L, Ye Q, Pang R, Wu S, Gu Q, Ding Y, Wu Q. | Front Microbiol | 10.3389/fmicb.2021.656380 | 2021 | ||
| Metabolism | Natural Transformation in Vibrio parahaemolyticus: a Rapid Method To Create Genetic Deletions. | Chimalapati S, de Souza Santos M, Servage K, De Nisco NJ, Dalia AB, Orth K. | J Bacteriol | 10.1128/jb.00032-18 | 2018 | |
| Genetic Structure, Function, and Evolution of Capsule Biosynthesis Loci in Vibrio parahaemolyticus. | Bian S, Zeng W, Li Q, Li Y, Wong NK, Jiang M, Zuo L, Hu Q, Li L. | Front Microbiol | 10.3389/fmicb.2020.546150 | 2020 | ||
| Genetic Analysis of Vibrio parahaemolyticus O3:K6 Strains That Have Been Isolated in Mexico Since 1998. | Guerrero A, Lizarraga-Partida ML, Gomez Gil Rodriguez B, Licea-Navarro AF, Revilla-Castellanos VJ, Wong-Chang I, Gonzalez-Sanchez R. | PLoS One | 10.1371/journal.pone.0169722 | 2017 | ||
| Metabolism | The regulatory network of Vibrio parahaemolyticus type VI secretion system 1. | Ben-Yaakov R, Salomon D. | Environ Microbiol | 10.1111/1462-2920.14594 | 2019 | |
| MS-Based in Situ Proteomics Reveals AMPylation of Host Proteins during Bacterial Infection. | Rauh T, Brameyer S, Kielkowski P, Jung K, Sieber SA. | ACS Infect Dis | 10.1021/acsinfecdis.0c00740 | 2020 | ||
| Advances in Small Molecule Inhibitors Targeting the Bacterial Lipoprotein Transport System (Lol) in Gram-Negative Bacteria. | Song S, Shim SY. | Chem Asian J | 10.1002/asia.202500350 | 2025 | ||
| Genetics | Genome Analysis Identifies a Novel Type III Secretion System (T3SS) Category in Vibrio Species. | Zakaria D, Matsuda S, Iida T, Hayashi T, Arita M. | Microorganisms | 10.3390/microorganisms11020290 | 2023 | |
| Genetics | Microbial community characterization of shrimp survivors to AHPND challenge test treated with an effective shrimp probiotic (Vibrio diabolicus). | Restrepo L, Dominguez-Borbor C, Bajana L, Betancourt I, Rodriguez J, Bayot B, Reyes A. | Microbiome | 10.1186/s40168-021-01043-8 | 2021 | |
| Computationally Designed Anti-LuxP DNA Aptamer Suppressed Flagellar Assembly- and Quorum Sensing-Related Gene Expression in Vibrio parahaemolyticus. | Yusof NAM, Razali SA, Mohd Padzil A, Lau BYC, Baharum SN, Nor Muhammad NA, Raston NHA, Chong CM, Ikhsan NFM, Situmorang ML, Fei LC. | Biology (Basel) | 10.3390/biology11111600 | 2022 | ||
| Enzymology | Organic Hydroperoxide Resistance Gene ohr (VPA1681) Confers Protection against Organic Peroxides in the Presence of Alkyl Hydroperoxide Reductase Genes in Vibrio parahaemolyticus. | Chen NX, Chu YJ, Ni B, Hsu P, Wong HC. | Appl Environ Microbiol | 10.1128/aem.00861-21 | 2021 | |
| Transcriptome | Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus. | Al Kadi M, Ishii E, Truong DT, Motooka D, Matsuda S, Iida T, Kodama T, Okuzaki D. | mSystems | 10.1128/msystems.00996-21 | 2021 | |
| Genetics | Insights into the Vibrio Genus: A One Health Perspective from Host Adaptability and Antibiotic Resistance to In Silico Identification of Drug Targets. | Marques PH, Prado LCDS, Felice AG, Rodrigues TCV, Pereira UP, Jaiswal AK, Azevedo V, Oliveira CJF, Soares S. | Antibiotics (Basel) | 10.3390/antibiotics11101399 | 2022 | |
| Transcriptome | Potential Survival and Pathogenesis of a Novel Strain, Vibrio parahaemolyticus FORC_022, Isolated From a Soy Sauce Marinated Crab by Genome and Transcriptome Analyses. | Chung HY, Lee B, Na EJ, Lee KH, Ryu S, Yoon H, Lee JH, Kim HB, Kim H, Jeong HG, Kim BS, Choi SH. | Front Microbiol | 10.3389/fmicb.2018.01504 | 2018 | |
| Phylogeny | Insight Into the Origin and Evolution of the Vibrio parahaemolyticus Pandemic Strain. | Espejo RT, Garcia K, Plaza N. | Front Microbiol | 10.3389/fmicb.2017.01397 | 2017 | |
| Genetics | Genome diversification within a clonal population of pandemic Vibrio parahaemolyticus seems to depend on the life circumstances of each individual bacteria. | Loyola DE, Navarro C, Uribe P, Garcia K, Mella C, Diaz D, Valdes N, Martinez-Urtaza J, Espejo RT. | BMC Genomics | 10.1186/s12864-015-1385-8 | 2015 | |
| Phylogeny | PirVP genes causing AHPND identified in a new Vibrio species (Vibrio punensis) within the commensal Orientalis clade. | Restrepo L, Bayot B, Arciniegas S, Bajana L, Betancourt I, Panchana F, Reyes Munoz A. | Sci Rep | 10.1038/s41598-018-30903-x | 2018 | |
| Galleria mellonella as an infection model to investigate virulence of Vibrio parahaemolyticus. | Wagley S, Borne R, Harrison J, Baker-Austin C, Ottaviani D, Leoni F, Vuddhakul V, Titball RW. | Virulence | 10.1080/21505594.2017.1384895 | 2018 | ||
| A Markerless Gene Deletion System in Streptococcus suis by Using the Copper-Inducible Vibrio parahaemolyticus YoeB Toxin as a Counterselectable Marker. | Zheng C, Wei M, Qiu J, Li J. | Microorganisms | 10.3390/microorganisms9051095 | 2021 | ||
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| Metabolism | Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery. | Kim HU, Kim SY, Jeong H, Kim TY, Kim JJ, Choy HE, Yi KY, Rhee JH, Lee SY. | Mol Syst Biol | 10.1038/msb.2010.115 | 2011 | |
| The smallest known genomes of multicellular and toxic cyanobacteria: comparison, minimal gene sets for linked traits and the evolutionary implications. | Stucken K, John U, Cembella A, Murillo AA, Soto-Liebe K, Fuentes-Valdes JJ, Friedel M, Plominsky AM, Vasquez M, Glockner G. | PLoS One | 10.1371/journal.pone.0009235 | 2010 | ||
| Metabolism | Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach. | Wei H, Qi J, Hao B. | Sci China C Life Sci | 10.1360/03yc0137 | 2004 | |
| Metabolism | Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes. | Perez AG, Angarica VE, Vasconcelos AT, Collado-Vides J. | Nucleic Acids Res | 10.1093/nar/gkl800 | 2007 | |
| Genetics | Comparative genomics of gene-family size in closely related bacteria. | Pushker R, Mira A, Rodriguez-Valera F. | Genome Biol | 10.1186/gb-2004-5-4-r27 | 2004 | |
| Metabolism | Topology and function of CcmD in cytochrome c maturation. | Richard-Fogal CL, Frawley ER, Kranz RG. | J Bacteriol | 10.1128/jb.00146-08 | 2008 | |
| Metabolism | The flagellar basal body-associated protein FlgT is essential for a novel ring structure in the sodium-driven Vibrio motor. | Terashima H, Koike M, Kojima S, Homma M. | J Bacteriol | 10.1128/jb.00720-10 | 2010 | |
| Phylogeny | Comparative genomic analyses of the bacterial phosphotransferase system. | Barabote RD, Saier MH. | Microbiol Mol Biol Rev | 10.1128/mmbr.69.4.608-634.2005 | 2005 | |
| Enzymology | Chalcone isomerase family and fold: no longer unique to plants. | Gensheimer M, Mushegian A. | Protein Sci | 10.1110/ps.03395404 | 2004 | |
| Transcriptome | Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. | Wang J, Yang B, An Y, Marquez-Lago T, Leier A, Wilksch J, Hong Q, Zhang Y, Hayashida M, Akutsu T, Webb GI, Strugnell RA, Song J, Lithgow T. | Brief Bioinform | 10.1093/bib/bbx164 | 2019 | |
| Genetics | Genomic and phenotypic characterization of Vibrio cholerae non-O1 isolates from a US Gulf Coast cholera outbreak. | Haley BJ, Choi SY, Grim CJ, Onifade TJ, Cinar HN, Tall BD, Taviani E, Hasan NA, Abdullah AH, Carter L, Sahu SN, Kothary MH, Chen A, Baker R, Hutchinson R, Blackmore C, Cebula TA, Huq A, Colwell RR. | PLoS One | 10.1371/journal.pone.0086264 | 2014 | |
| Genetics | Comparative Genome Analyses of Vibrio anguillarum Strains Reveal a Link with Pathogenicity Traits. | Castillo D, Alvise PD, Xu R, Zhang F, Middelboe M, Gram L. | mSystems | 10.1128/msystems.00001-17 | 2017 | |
| Phylogeny | Diversity and functional analysis of luxS genes in vibrios from marine sponges Mycale laxissima and Ircinia strobilina. | Zan J, Fuqua C, Hill RT. | ISME J | 10.1038/ismej.2011.31 | 2011 | |
| Genetics | Comparative genomics evidence that only protein toxins are tagging bad bugs. | Georgiades K, Raoult D. | Front Cell Infect Microbiol | 10.3389/fcimb.2011.00007 | 2011 | |
| Genetic analysis of the requirement for flp-2, tadV, and rcpB in Actinobacillus actinomycetemcomitans biofilm formation. | Perez BA, Planet PJ, Kachlany SC, Tomich M, Fine DH, Figurski DH. | J Bacteriol | 10.1128/jb.00496-06 | 2006 | ||
| Coevolution of the ATPase ClpV, the sheath proteins TssB and TssC, and the accessory protein TagJ/HsiE1 distinguishes type VI secretion classes. | Forster A, Planamente S, Manoli E, Lossi NS, Freemont PS, Filloux A. | J Biol Chem | 10.1074/jbc.m114.600510 | 2014 | ||
| Metabolism | Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships. | Cai L, Tan D, Aibaidula G, Dong XR, Chen JC, Tian WD, Chen GQ. | Microb Cell Fact | 10.1186/1475-2859-10-88 | 2011 | |
| Evidence of transfer by conjugation of type IV secretion system genes between Bartonella species and Rhizobium radiobacter in amoeba. | Saisongkorh W, Robert C, La Scola B, Raoult D, Rolain JM. | PLoS One | 10.1371/journal.pone.0012666 | 2010 | ||
| Pathogenicity | Characterization of a Campylobacter jejuni VirK protein homolog as a novel virulence determinant. | Novik V, Hofreuter D, Galan JE. | Infect Immun | 10.1128/iai.00528-09 | 2009 | |
| Genomic diversity in Campylobacter jejuni: identification of C. jejuni 81-176-specific genes. | Poly F, Threadgill D, Stintzi A. | J Clin Microbiol | 10.1128/jcm.43.5.2330-2338.2005 | 2005 | ||
| A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins. | Babu MM, Priya ML, Selvan AT, Madera M, Gough J, Aravind L, Sankaran K. | J Bacteriol | 10.1128/jb.188.8.2761-2773.2006 | 2006 | ||
| Enzymology | The structure of Haemophilus influenzae prephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes. | Chiu HJ, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Clayton T, Das D, Deller MC, Duan L, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Okach L, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA. | Acta Crystallogr Sect F Struct Biol Cryst Commun | 10.1107/s1744309110021688 | 2010 | |
| Biodiversity among luminescent symbionts from squid of the genera Uroteuthis, Loliolus and Euprymna (Mollusca: Cephalopoda). | Guerrero-Ferreira RC, Nishiguchi MK. | Cladistics | 10.1111/j.1096-0031.2007.00155.x | 2007 | ||
| Metabolism | The CcmC:heme:CcmE complex in heme trafficking and cytochrome c biosynthesis. | Richard-Fogal C, Kranz RG. | J Mol Biol | 10.1016/j.jmb.2010.06.041 | 2010 | |
| Metabolism | Heme ligand identification and redox properties of the cytochrome c synthetase, CcmF. | San Francisco B, Bretsnyder EC, Rodgers KR, Kranz RG. | Biochemistry | 10.1021/bi201508t | 2011 | |
| Identification and characterization of a hemolysin gene cluster in Vibrio anguillarum. | Rock JL, Nelson DR. | Infect Immun | 10.1128/iai.74.5.2777-2786.2006 | 2006 | ||
| Role and regulation of fatty acid biosynthesis in the response of Shewanella piezotolerans WP3 to different temperatures and pressures. | Wang F, Xiao X, Ou HY, Gai Y, Wang F. | J Bacteriol | 10.1128/jb.00498-08 | 2009 | ||
| Metabolism | Bacterial heme-transport proteins and their heme-coordination modes. | Tong Y, Guo M. | Arch Biochem Biophys | 10.1016/j.abb.2008.10.013 | 2009 | |
| Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms. | Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G. | Genes (Basel) | 10.3390/genes2040869 | 2011 | ||
| Control of formation and cellular detachment from Shewanella oneidensis MR-1 biofilms by cyclic di-GMP. | Thormann KM, Duttler S, Saville RM, Hyodo M, Shukla S, Hayakawa Y, Spormann AM. | J Bacteriol | 10.1128/jb.188.7.2681-2691.2006 | 2006 | ||
| Emergence of a virulent clade of Vibrio vulnificus and correlation with the presence of a 33-kilobase genomic island. | Cohen AL, Oliver JD, DePaola A, Feil EJ, Boyd EF. | Appl Environ Microbiol | 10.1128/aem.00635-07 | 2007 | ||
| Enzymology | The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context. | Song J, Bonner CA, Wolinsky M, Jensen RA. | BMC Biol | 10.1186/1741-7007-3-13 | 2005 | |
| Genetics | Coverage of whole proteome by structural genomics observed through protein homology modeling database. | Yura K, Yamaguchi A, Go M. | J Struct Funct Genomics | 10.1007/s10969-006-9010-3 | 2006 | |
| Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. | Price MN, Dehal PS, Arkin AP. | Genome Biol | 10.1186/gb-2008-9-1-r4 | 2008 | ||
| The TetR family of transcriptional repressors. | Ramos JL, Martinez-Bueno M, Molina-Henares AJ, Teran W, Watanabe K, Zhang X, Gallegos MT, Brennan R, Tobes R. | Microbiol Mol Biol Rev | 10.1128/mmbr.69.2.326-356.2005 | 2005 | ||
| Transcriptome | Pyrosequencing-based comparative genome analysis of Vibrio vulnificus environmental isolates. | Morrison SS, Williams T, Cain A, Froelich B, Taylor C, Baker-Austin C, Verner-Jeffreys D, Hartnell R, Oliver JD, Gibas CJ. | PLoS One | 10.1371/journal.pone.0037553 | 2012 | |
| Metabolism | Cytochrome c biogenesis: mechanisms for covalent modifications and trafficking of heme and for heme-iron redox control. | Kranz RG, Richard-Fogal C, Taylor JS, Frawley ER. | Microbiol Mol Biol Rev | 10.1128/mmbr.00001-09 | 2009 | |
| Phylogeny | A system to automatically classify and name any individual genome-sequenced organism independently of current biological classification and nomenclature. | Marakeby H, Badr E, Torkey H, Song Y, Leman S, Monteil CL, Heath LS, Vinatzer BA. | PLoS One | 10.1371/journal.pone.0089142 | 2014 | |
| Genetics | Differential replication dynamics for large and small Vibrio chromosomes affect gene dosage, expression and location. | Dryselius R, Izutsu K, Honda T, Iida T. | BMC Genomics | 10.1186/1471-2164-9-559 | 2008 | |
| Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae). | Ravcheev DA, Gerasimova AV, Mironov AA, Gelfand MS. | BMC Genomics | 10.1186/1471-2164-8-54 | 2007 | ||
| Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes. | Krupa A, Srinivasan N. | BMC Genomics | 10.1186/1471-2164-6-129 | 2005 | ||
| Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria. | Gonzalez Perez AD, Gonzalez Gonzalez E, Espinosa Angarica V, Vasconcelos AT, Collado-Vides J. | BMC Genomics | 10.1186/1471-2164-9-128 | 2008 | ||
| Metabolism | Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life. | Gillespie JJ, Williams K, Shukla M, Snyder EE, Nordberg EK, Ceraul SM, Dharmanolla C, Rainey D, Soneja J, Shallom JM, Vishnubhat ND, Wattam R, Purkayastha A, Czar M, Crasta O, Setubal JC, Azad AF, Sobral BS. | PLoS One | 10.1371/journal.pone.0002018 | 2008 | |
| Phylogeny | Grimontia indica AK16(T), sp. nov., isolated from a seawater sample reports the presence of pathogenic genes similar to Vibrio genus. | Singh A, Vaidya B, Khatri I, Srinivas TN, Subramanian S, Korpole S, Pinnaka AK. | PLoS One | 10.1371/journal.pone.0085590 | 2014 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #41731 | Collection of Institut Pasteur ; Curators of the CIP; CIP 110006 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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