Propionispora vibrioides (DSM 13305, FBKS1, JCM 17185)

Name: Propionispora vibrioides (DSM 13305, FBKS1, JCM 17185)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17149

Type strain

Strain Designation FBKS1

Culture col. no. DSM 13305 FBKS1 JCM 17185

NCBI tax ID(s) 1123004 112903

Special Collections DSMZ JCM

History <- H. Biebl, Gesellschaft für Biotechnologische Forschung, Braunschweig, Germany; FBKS1 <- H. Biebl {1996} DSM 13305 <-- H. Biebl FBKS1.

Links

Propionispora vibrioides FBKS1 is an anaerobe bacterium that was isolated from compost.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49454

DSM 13305,JCM 17185

@ref 20215

Last LPSN update 2026-02-09 11:22:08

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Sporomusaceae

Genus Propionispora

Species Propionispora vibrioides

Full scientific name Propionispora vibrioides Biebl et al. 2001

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4992	ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)		Medium recipe at MediaDive	Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: D-Fructose 4.98504 g/l Na2CO3 1.49551 g/l Yeast extract 0.997009 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4992	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4992	anaerobe
125439	anaerobe	98.8

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	coenzyme A metabolism	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	glycine betaine biosynthesis	100	5 of 5
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	aspartate and asparagine metabolism	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	L-lactaldehyde degradation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	degradation of sugar alcohols	93.75	15 of 16
66794	vitamin B1 metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	starch degradation	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	flavin biosynthesis	86.67	13 of 15
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B12 metabolism	82.35	28 of 34
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	pyrimidine metabolism	80	36 of 45
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	d-mannose degradation	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	alanine metabolism	75.86	22 of 29
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	vitamin B6 metabolism	72.73	8 of 11
66794	citric acid cycle	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	purine metabolism	70.21	66 of 94
66794	propionate fermentation	70	7 of 10
66794	Entner Doudoroff pathway	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	histidine metabolism	68.97	20 of 29
66794	acetoin degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	gluconeogenesis	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	oxidative phosphorylation	61.54	56 of 91
66794	non-pathway related	60.53	23 of 38
66794	methylglyoxal degradation	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	hydrogen production	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	degradation of pentoses	57.14	16 of 28
66794	glutathione metabolism	57.14	8 of 14
66794	degradation of hexoses	55.56	10 of 18
66794	allantoin degradation	55.56	5 of 9
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	tryptophan metabolism	55.26	21 of 38
66794	metabolism of disaccharids	54.55	6 of 11
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	urea cycle	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	leucine metabolism	53.85	7 of 13
66794	lysine metabolism	52.38	22 of 42
66794	1,4-dihydroxy-6-naphthoate biosynthesis	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	vitamin E metabolism	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	arginine metabolism	50	12 of 24
66794	quinate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	adipate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	polyamine pathway	47.83	11 of 23
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	lipid metabolism	45.16	14 of 31
66794	nitrate assimilation	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	ascorbate metabolism	36.36	8 of 22
66794	d-xylose degradation	36.36	4 of 11
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	methane metabolism	33.33	1 of 3
66794	phenol degradation	30	6 of 20
66794	degradation of sugar acids	28	7 of 25
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	cyclohexanol degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	arachidonic acid metabolism	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4992	compost	Germany	DEU	Europe
67770	Compost

Taxonmaps

69479

Global distribution of 16S sequence AJ279802 (>99% sequence identity) for Propionispora vibrioides subclade from Microbeatlas

Aquatic Samples	53
Soil Samples	4
Animal Samples	13
Plant Samples	2
Total Samples	72

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4992	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2634166332 annotated assembly for Propionispora vibrioides DSM 13305	scaffold	GCA_900110485	112903.3	2634166332	112903	64.62

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4992	Propionispora vibrioides 16S rRNA gene, isolate FKBS1	AJ279802	1534		112903

GC content

@ref	GC-content (mol%)	Method
4992	48.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Propionispora vibrioides DSM 13305
NCBI: GCA_900110485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	58.90	no
125439	motility	BacteriaNetⓘ	no	56.70	no
125439	gram_stain	BacteriaNetⓘ	positive	81.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	A Small-Molecule Inhibitor of Gut Bacterial Urease Protects the Host from Liver Injury.	Richards-Corke KC, Jiang Y, Yeliseyev V, Zhang Y, Franzosa EA, Wang ZA, Yapa Abeywardana M, Cole PA, Huttenhower C, Bry L, Balskus EP.	ACS Chem Biol	10.1021/acschembio.3c00556	2025
Genetics	Tartrate fermentation with H₂ production by a new member of Sporomusaceae enriched from rice paddy soil.	Pereira-Mora L, Guerrero LD, Erijman L, Fernandez-Scavino A.	Appl Environ Microbiol	10.1128/aem.02351-23	2024
Biotechnology	Method for automated high performance closed batch cultivation of gas-utilizing methanogens.	Hofmann W, Orthofer M, Salas Wallach N, Ruddyard A, Ungerank M, Paulik C, Rittmann SKR.	AMB Express	10.1186/s13568-025-01872-y	2025
	Bioactive Naphtho-alpha-Pyranones from Two Endophytic Fungi of the Genus Polyphilus.	Wennrich JP, Sepanian E, Ebada SS, Llanos-Lopez NA, Ashrafi S, Maier W, Kurtan T, Stadler M.	Antibiotics (Basel)	10.3390/antibiotics12081273	2023
Enzymology	Metabolomic and Genomic Analysis of Bioactive Compounds of Phacidium infestans Karsten DSM 5139 Cultivated on Pinus sylvestris Needles.	Zerouki C, Mofikoya O, Badar T, Makinen M, Turunen O, Janis J.	Environ Microbiol Rep	10.1111/1758-2229.70084	2025
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	The human intestinal bacterium Eggerthella lenta influences gut metabolomes in gnotobiotic mice	Viehof A, Haange S, Streidl T, Schubert K, Engelmann B, Haller D, Rolle-Kampczyk U, von Bergen M, Clavel T.	Microbiome Res Rep		2024
	Biosynthesis and characterization of silver nanoparticles from Punica granatum (pomegranate) peel waste and its application to inhibit foodborne pathogens.	Farouk SM, Abu-Hussien SH, Abd-Elhalim BT, Mohamed RM, Arabe NM, Hussain AAT, Mostafa ME, Hemdan B, El-Sayed SM, Bakry A, Ebeed NM, Salah M, Elhariry H, Galal A.	Sci Rep	10.1038/s41598-023-46355-x	2023
	Diversity of rhizospheric and endophytic bacteria isolated from dried fruit of Ficus carica.	Abid L, Smiri M, Federici E, Lievens B, Manai M, Yan Y, Sadfi-Zouaoui N.	Saudi J Biol Sci	10.1016/j.sjbs.2022.103398	2022
	Genome Sequence of the Acetogenic Bacterium Acetobacterium wieringae DSM 1911T.	Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Durre P.	Genome Announc	10.1128/genomea.01430-16	2016
Genetics	Ecology- and genome-based identification of the Bifidobacterium adolescentis prototype of the healthy human gut microbiota.	Argentini C, Lugli GA, Tarracchini C, Fontana F, Mancabelli L, Viappiani A, Anzalone R, Angelini L, Alessandri G, Bianchi MG, Taurino G, Bussolati O, Milani C, van Sinderen D, Turroni F, Ventura M.	Appl Environ Microbiol	10.1128/aem.02014-23	2024
	Cytotoxic and antimicrobial activities of secondary metabolites isolated from the deep-sea-derived Actinoalloteichus cyanogriseus 12A22.	Zhang X, Song C, Bai Y, Hu J, Pan H.	3 Biotech	10.1007/s13205-021-02846-0	2021
Enzymology	Identification, cloning, heterologous expression, and characterization of a NADPH-dependent 7beta-hydroxysteroid dehydrogenase from Collinsella aerofaciens.	Liu L, Aigner A, Schmid RD.	Appl Microbiol Biotechnol	10.1007/s00253-010-3052-y	2011
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Genetics	Genome mining of sulfonated lanthipeptides reveals unique cyclic peptide sulfotransferases.	Wang M, Li WW, Cao Z, Sun J, Xiong J, Tao SQ, Lv T, Gao K, Luo S, Dong SH.	Acta Pharm Sin B	10.1016/j.apsb.2024.02.016	2024
	Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise.	Ruckert C, Kriete M, Jaenicke S, Winkler A, Tauch A.	Genome Announc	10.1128/genomea.00784-15	2015
Enzymology	Bioconversion of Phytosterols to 9-Hydroxy-3-Oxo-4,17-Pregadiene-20-Carboxylic Acid Methyl Ester by Enoyl-CoA Deficiency and Modifying Multiple Genes in Mycolicibacterium neoaurum.	Yuan C, Song S, He J, Zhang J, Liu X, Pena EL, Sun J, Shi J, Su Z, Zhang B.	Appl Environ Microbiol	10.1128/aem.01303-22	2022
	The Bladder Microbiome Is Associated with Epithelial-Mesenchymal Transition in Muscle Invasive Urothelial Bladder Carcinoma.	Li WT, Iyangar AS, Reddy R, Chakladar J, Bhargava V, Sakamoto K, Ongkeko WM, Rajasekaran M.	Cancers (Basel)	10.3390/cancers13153649	2021
Metabolism	Ethanol production from sugarcane bagasse hydrolysate using Pichia stipitis.	Canilha L, Carvalho W, Felipe Md, Silva JB, Giulietti M.	Appl Biochem Biotechnol	10.1007/s12010-009-8792-8	2010
	Simplicilones A and B Isolated from the Endophytic Fungus Simplicillium subtropicum SPC3.	Anoumedem EGM, Mountessou BYG, Kouam SF, Narmani A, Surup F.	Antibiotics (Basel)	10.3390/antibiotics9110753	2020
	Cultivation and Genomic Characterization of the Bile Bacterial Species From Cholecystitis Patients.	Yan Q, Zhang S, Li S, Wang G, Zhang A, Jin T, Zhang Y, Lv Q, Xiao M, Sun Y, Li X, Cui S, Li R, Ma X, Wang C, Tian X, Duan X, Xin Y, Mao X, Ma Y.	Front Microbiol	10.3389/fmicb.2021.739621	2021
	Detection of interphylum transfers of the magnetosome gene cluster in magnetotactic bacteria.	Uzun M, Koziaeva V, Dziuba M, Leao P, Krutkina M, Grouzdev D.	Front Microbiol	10.3389/fmicb.2022.945734	2022
	Enzymatic Hydrolysate of Cinnamon Waste Material as Feedstock for the Microbial Production of Carotenoids.	Bertacchi S, Pagliari S, Cantu C, Bruni I, Labra M, Branduardi P.	Int J Environ Res Public Health	10.3390/ijerph18031146	2021
	Safety and efficacy of Lactobacillus parafarraginis DSM 32962 as a silage additive for all animal species.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Kos Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Cocconcelli PS, Glandorf B, Prieto Maradona M, Saarela M, Galobart J, Gregoretti L, Innocenti M, Lopez-Galvez G, Pettenati E, Sofianidis K, Vettori MV, Brozzi R.	EFSA J	10.2903/j.efsa.2020.6201	2020
	Spectral Grouping of Nominally Aspergillus versicolor Microbial-Collection Deposits by MALDI-TOF MS.	Reeve MA, Caine TS, Buddie AG.	Microorganisms	10.3390/microorganisms7080235	2019
Enzymology	Identification of Trueperella pyogenes isolated from bovine mastitis by Fourier transform infrared spectroscopy.	Nagib S, Rau J, Sammra O, Lammler C, Schlez K, Zschock M, Prenger-Berninghoff E, Klein G, Abdulmawjood A.	PLoS One	10.1371/journal.pone.0104654	2014
Biotechnology	Lipidomics and Comparative Metabolite Excretion Analysis of Methanogenic Archaea Reveal Organism-Specific Adaptations to Varying Temperatures and Substrate Concentrations.	Taubner RS, Baumann LMF, Steiner M, Pfeifer K, Reischl B, Korynt K, Bauersachs T, Mahnert B, Clifford EL, Peckmann J, Schuster B, Birgel D, Rittmann SKR.	mSystems	10.1128/msystems.01159-22	2023
	Membrane Lipid Composition and Amino Acid Excretion Patterns of Methanothermococcus okinawensis Grown in the Presence of Inhibitors Detected in the Enceladian Plume.	Taubner RS, Baumann LMF, Bauersachs T, Clifford EL, Mahnert B, Reischl B, Seifert R, Peckmann J, Rittmann SKR, Birgel D.	Life (Basel)	10.3390/life9040085	2019
	Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation.	Kuzmanovic N, Fagorzi C, Mengoni A, Lassalle F, diCenzo GC.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005243	2022
Metabolism	A secreted antibacterial neuropeptide shapes the microbiome of Hydra.	Augustin R, Schroder K, Murillo Rincon AP, Fraune S, Anton-Erxleben F, Herbst EM, Wittlieb J, Schwentner M, Grotzinger J, Wassenaar TM, Bosch TCG.	Nat Commun	10.1038/s41467-017-00625-1	2017
Genetics	Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species.	Alessa O, Ogura Y, Fujitani Y, Takami H, Hayashi T, Sahin N, Tani A.	Front Microbiol	10.3389/fmicb.2021.740610	2021
Phylogeny	Phylogenetic relationships in the family Streptomycetaceae using multi-locus sequence analysis.	Labeda DP, Dunlap CA, Rong X, Huang Y, Doroghazi JR, Ju KS, Metcalf WW.	Antonie Van Leeuwenhoek	10.1007/s10482-016-0824-0	2017
	Method for Indirect Quantification of CH4 Production via H2O Production Using Hydrogenotrophic Methanogens.	Taubner RS, Rittmann SK.	Front Microbiol	10.3389/fmicb.2016.00532	2016
Metabolism	Coordinated Biosynthesis of the Purine Nucleoside Antibiotics Aristeromycin and Coformycin in Actinomycetes.	Xu G, Kong L, Gong R, Xu L, Gao Y, Jiang M, Cai YS, Hong K, Hu Y, Liu P, Deng Z, Price NPJ, Chen W.	Appl Environ Microbiol	10.1128/aem.01860-18	2018
Genetics	Diversity of Vibrio navarrensis Revealed by Genomic Comparison: Veterinary Isolates Are Related to Strains Associated with Human Illness and Sewage Isolates While Seawater Strains Are More Distant.	Schwartz K, Kukuc C, Bier N, Taureck K, Hammerl JA, Strauch E.	Front Microbiol	10.3389/fmicb.2017.01717	2017
	Biological methane production under putative Enceladus-like conditions.	Taubner RS, Pappenreiter P, Zwicker J, Smrzka D, Pruckner C, Kolar P, Bernacchi S, Seifert AH, Krajete A, Bach W, Peckmann J, Paulik C, Firneis MG, Schleper C, Rittmann SKR.	Nat Commun	10.1038/s41467-018-02876-y	2018
	Quantification of Slackia and Eggerthella spp. in Human Feces and Adhesion of Representatives Strains to Caco-2 Cells.	Cho GS, Ritzmann F, Eckstein M, Huch M, Briviba K, Behsnilian D, Neve H, Franz CM.	Front Microbiol	10.3389/fmicb.2016.00658	2016
Metabolism	Discovery and Biosynthesis of the Antibiotic Bicyclomycin in Distantly Related Bacterial Classes.	Vior NM, Lacret R, Chandra G, Dorai-Raj S, Trick M, Truman AW.	Appl Environ Microbiol	10.1128/aem.02828-17	2018
Enzymology	Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed.	Wust PK, Nacke H, Kaiser K, Marhan S, Sikorski J, Kandeler E, Daniel R, Overmann J.	Appl Environ Microbiol	10.1128/aem.00019-16	2016
Metabolism	Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation.	Wlodarska M, Luo C, Kolde R, d'Hennezel E, Annand JW, Heim CE, Krastel P, Schmitt EK, Omar AS, Creasey EA, Garner AL, Mohammadi S, O'Connell DJ, Abubucker S, Arthur TD, Franzosa EA, Huttenhower C, Murphy LO, Haiser HJ, Vlamakis H, Porter JA, Xavier RJ.	Cell Host Microbe	10.1016/j.chom.2017.06.007	2017
Phylogeny	Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.	Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Goker M, Goodfellow M.	Sci Rep	10.1038/s41598-017-17392-0	2018
Phylogeny	Establishment of an analytical system for the human fecal microbiota, based on reverse transcription-quantitative PCR targeting of multicopy rRNA molecules.	Matsuda K, Tsuji H, Asahara T, Matsumoto K, Takada T, Nomoto K.	Appl Environ Microbiol	10.1128/aem.01843-08	2009
Phylogeny	Description of Lujinxingia vulgaris sp. nov., isolated from coastal sediment via prey-traps.	Wang S, Mu DS, Li GY, Du ZJ.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01640-5	2021
Phylogeny	Caulobacter zeae sp. nov. and Caulobacter radicis sp. nov., novel endophytic bacteria isolated from maize root (Zea mays L.).	Gao JL, Sun P, Sun XH, Tong S, Yan H, Han ML, Mao XJ, Sun JG.	Syst Appl Microbiol	10.1016/j.syapm.2018.08.010	2018
Phylogeny	Caulobacter flavus sp. nov., a stalked bacterium isolated from rhizosphere soil.	Sun LN, Yang ED, Wei JC, Tang XY, Cao YY, Han GM.	Int J Syst Evol Microbiol	10.1099/ijsem.0.000585	2015
Phylogeny	Allochromatium humboldtianum sp. nov., isolated from soft coastal sediments.	Serrano W, Schrubbers J, Amann R, Fischer U.	Int J Syst Evol Microbiol	10.1099/ijs.0.000364	2015
Phylogeny	Cohnella capsici sp. nov., a novel nitrogen-fixing species isolated from Capsicum annuum rhizosphere soil, and emended description of Cohnella plantaginis.	Wang LY, Wang TS, Chen SF.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0310-5	2015
Phylogeny	Micromonospora equina sp. nov., isolated from soil from a racecourse.	Everest GJ, Meyers PR.	Int J Syst Evol Microbiol	10.1099/ijs.0.042929-0	2013
	Unprecedented Antimicrobial and Cytotoxic Polyketides from Cultures of Diaporthe africana sp. nov.	Matio Kemkuignou B, Lambert C, Stadler M, Kouam Fogue S, Marin-Felix Y.	J Fungi (Basel)	10.3390/jof9070781	2023

References

#4992	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13305
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Propionispora vibrioides (DSM 13305, FBKS1, JCM 17185)

Name and taxonomic classification

Morphology

Culture and growth conditions

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Oxygen tolerance

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