Archive BacDiveID:10.13145/bacdive17149.20240916.9.1

Strain identifier

BacDive ID: 17149

Type strain:

Species: Propionispora vibrioides

Strain Designation: FBKS1

Strain history: DSM 13305 <-- H. Biebl FBKS1.

NCBI tax ID(s): 1123004 (strain), 112903 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 4992

BacDive-ID: 17149

DSM-Number: 13305

keywords: genome sequence, 16S sequence, Bacteria, anaerobe

description: Propionispora vibrioides FBKS1 is an anaerobe bacterium that was isolated from compost.

NCBI tax id

NCBI tax id	Matching level
112903	species
1123004	strain

strain history

@ref	history
4992	<- H. Biebl, Gesellschaft für Biotechnologische Forschung, Braunschweig, Germany; FBKS1 <- H. Biebl {1996}
67770	DSM 13305 <-- H. Biebl FBKS1.

doi: 10.13145/bacdive17149.20240916.9.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Propionispora
species: Propionispora vibrioides
full scientific name: Propionispora vibrioides Biebl et al. 2001

@ref: 4992

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Selenomonadales

family: Sporomusaceae

genus: Propionispora

species: Propionispora vibrioides

full scientific name: Propionispora vibrioides Biebl et al. 2001

strain designation: FBKS1

type strain: yes

Culture and growth conditions

culture medium

@ref: 4992
name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)
growth: yes
link: https://mediadive.dsmz.de/medium/503
composition: Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: D-Fructose 4.98504 g/l Na2CO3 1.49551 g/l Yeast extract 0.997009 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

@ref	growth	type	temperature
4992	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

oxygen tolerance

@ref: 4992
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref	sample type	country	origin.country	continent
4992	compost	Germany	DEU	Europe
67770	Compost

isolation source categories

Cat1: #Engineered
Cat2: #Biodegradation
Cat3: #Composting

taxonmaps

@ref: 69479
File name: preview.99_95767.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_208;96_18501;97_22871;98_65701;99_95767&stattab=map
Last taxonomy: Propionispora vibrioides subclade
16S sequence: AJ279802
Sequence Identity:
Total samples: 72
soil counts: 4
aquatic counts: 53
animal counts: 13
plant counts: 2

Safety information

risk assessment

@ref: 4992
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 4992
description: Propionispora vibrioides 16S rRNA gene, isolate FKBS1
accession: AJ279802
length: 1534
database: nuccore
NCBI tax ID: 112903

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Propionispora vibrioides strain DSM 13305	112903.3	wgs	patric	112903
66792	Propionispora vibrioides DSM 13305	2634166332	draft	img	1123004
67770	Propionispora vibrioides DSM 13305	GCA_900110485	scaffold	ncbi	112903

GC content

@ref: 4992
GC-content: 48.5
method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@ref: 69481
trait: spore-forming
model: spore-forming
description: Ability to form endo- or exospores
prediction: yes
confidence: 65
training_data: no

External links

@ref: 4992

culture collection no.: DSM 13305, JCM 17185

straininfo link

@ref: 86148
straininfo: 49454

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
4992	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13305)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-13305
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
86148	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID49454.1	StrainInfo: A central database for resolving microbial strain identifiers