Strain identifier
BacDive ID: 17149
Type strain: 
Species: Propionispora vibrioides
Strain Designation: FBKS1
Strain history: DSM 13305 <-- H. Biebl FBKS1.
NCBI tax ID(s): 1123004 (strain), 112903 (species)
version 8.1 (current version)
General
@ref: 4992
BacDive-ID: 17149
DSM-Number: 13305
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Propionispora vibrioides FBKS1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from compost.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1123004 | strain |
| 112903 | species |
strain history
| @ref | history |
|---|---|
| 4992 | <- H. Biebl, Gesellschaft für Biotechnologische Forschung, Braunschweig, Germany; FBKS1 <- H. Biebl {1996} |
| 67770 | DSM 13305 <-- H. Biebl FBKS1. |
doi: 10.13145/bacdive17149.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Sporomusaceae
- genus: Propionispora
- species: Propionispora vibrioides
- full scientific name: Propionispora vibrioides Biebl et al. 2001
@ref: 4992
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Propionispora
species: Propionispora vibrioides
full scientific name: Propionispora vibrioides Biebl et al. 2001
strain designation: FBKS1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.687 | |
| 69480 | 99.807 | negative |
Culture and growth conditions
culture medium
- @ref: 4992
- name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)
- growth: yes
- link: https://mediadive.dsmz.de/medium/503
- composition: Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: D-Fructose 4.98504 g/l Na2CO3 1.49551 g/l Yeast extract 0.997009 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4992 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 4992 | anaerobe | |
| 69480 | anaerobe | 99.124 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 99.447
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 4992 | compost | Germany | DEU | Europe |
| 67770 | Compost |
isolation source categories
- Cat1: #Engineered
- Cat2: #Biodegradation
- Cat3: #Composting
taxonmaps
- @ref: 69479
- File name: preview.99_95767.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_208;96_18501;97_22871;98_65701;99_95767&stattab=map
- Last taxonomy: Propionispora vibrioides subclade
- 16S sequence: AJ279802
- Sequence Identity:
- Total samples: 72
- soil counts: 4
- aquatic counts: 53
- animal counts: 13
- plant counts: 2
Safety information
risk assessment
- @ref: 4992
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4992
- description: Propionispora vibrioides 16S rRNA gene, isolate FKBS1
- accession: AJ279802
- length: 1534
- database: ena
- NCBI tax ID: 112903
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Propionispora vibrioides strain DSM 13305 | 112903.3 | wgs | patric | 112903 |
| 66792 | Propionispora vibrioides DSM 13305 | 2634166332 | draft | img | 1123004 |
| 67770 | Propionispora vibrioides DSM 13305 | GCA_900110485 | scaffold | ncbi | 112903 |
GC content
- @ref: 4992
- GC-content: 48.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
- trait: spore-forming
- prediction: yes
- confidence: 65
- training_data: no
External links
@ref: 4992
culture collection no.: DSM 13305, JCM 17185
straininfo link
- @ref: 86148
- straininfo: 49454
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4992 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13305) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13305 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 86148 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49454.1 | StrainInfo: A central database for resolving microbial strain identifiers |