Name: Anaerovibrio lipolyticus 5S
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17117

Type strain:

Species: Anaerovibrio lipolyticus

Strain Designation: 5S, 7553

Culture col. no.: DSM 3074, ATCC 33276, CIP 105407, VPI 7553

Strain history: CIP <- 1998, DSMZ <- ATCC <- VPI: strain 7553 <- P.N. Hobson: strain 5S

NCBI tax ID(s): 1120997 (strain), 82374 (species)

SI-ID 45950

ATCC 33276, DSM 3074, CIP 105407

Other strains from Anaerovibrio lipolyticus

A. lipolyticus CCUG 15562

Section

Anaerovibrio lipolyticus 5S is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sheep rumen.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Selenomonadales*
	Family	*Selenomonadaceae*
	Genus	*Anaerovibrio*
	Species	**Anaerovibrio lipolyticus**
	Full Scientific Name (LPSN)	Anaerovibrio lipolyticus corrig. Hungate 1966 (Approved Lists 1980)

Synonym

Anaerovibrio lipolytica

Information on morphological and physiological properties Morphology

[Ref.: #120620]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.912

[Ref.: #120620]	Cell shape	rod-shaped

[Ref.: #120620]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39285]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #39285]

Culture medium growth

[Ref.: #39285]

Culture medium composition

expand / minimize

[Ref.: #1293]

Culture medium

RUMEN BACTERIA MEDIUM (DSMZ Medium 330)

[Ref.: #1293]

Culture medium growth

[Ref.: #1293]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1293]

Culture medium composition

expand / minimize

[Ref.: #120620]

Culture medium

CIP Medium 20

[Ref.: #120620]

Culture medium growth

[Ref.: #120620]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1293]	growth	37 °C
[Ref.: #39285]	growth	37 °C
[Ref.: #120620]	growth	37 °C

[Ref.: #1293]	Temperature range	mesophilic
[Ref.: #39285]	Temperature range	mesophilic
[Ref.: #120620]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1293]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.427

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1293]	Sample type/isolated from	sheep rumen

[Ref.: #120620]	Sample type/isolated from	Animal, Sheep, rumen
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB034191 (>99% sequence identity) for Anaerovibrio lipolyticus subclade from Microbeatlas

Aquatic Samples	120
Soil Samples	51
Animal Samples	5134
Plant Samples	70
Total Samples	5375

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1293]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120620]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1293]	Anaerovibrio lipolytica gene for 16S rRNA, partial sequence	AB034191	1587	ENA	1120997 tax ID
[Ref.: #20218]	Anaerovibrio lipolytica DSM 3074(T), 16S rRNA gene	AJ010959	1526	ENA	1120997 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerovibrio lipolyticus DSM 3074	GCA_900141865	scaffold	GenBank	1120997 tax ID	*
[Ref.: #66792]	Anaerovibrio lipolyticus 5S	GCA_000803025	contig	GenBank	82374 tax ID	*
[Ref.: #66792]	Anaerovibrio lipolyticus 5S	82374.4	wgs	PATRIC	82374 tax ID	*
[Ref.: #66792]	Anaerovibrio lipolyticus DSM 3074 strain DSM 3074	1120997.3	wgs	PATRIC	1120997 tax ID	*
[Ref.: #66792]	Anaerovibrio lipolyticus 5S	2630968883	draft	JGI IMG/M	82374 tax ID	*
[Ref.: #66792]	Anaerovibrio lipolyticus DSM 3074	2585428091	draft	JGI IMG/M	1120997 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerovibrio lipolyticus DSM 3074 DSM 3074 NCBI: GCA_900141865.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerovibrio lipolyticus DSM 3074 DSM 3074 NCBI: GCA_900141865.1
[Ref.: #69480]	motile	yes	82.789	no
[Ref.: #69480]	flagellated	no	69.554	no
[Ref.: #69480]	gram-positive	no	96.453	no
[Ref.: #69480]	anaerobic	yes	99.628	yes
[Ref.: #69480]	aerobic	no	98.418	yes
[Ref.: #69480]	halophile	no	95.199	no
[Ref.: #69480]	spore-forming	no	76.918	no
[Ref.: #69480]	thermophile	no	93.829	yes
[Ref.: #69480]	glucose-util	yes	61.229	no
[Ref.: #69480]	glucose-ferment	no	51.587	no

Availability in culture collections External links

[Ref.: #1293]

Culture collection no.

DSM 3074, ATCC 33276, CIP 105407, VPI 7553

[Ref.: #86117]

SI-ID 45950

References

#1293

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3074

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39285 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86117

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45950.1 )

#120620 Collection of Institut Pasteur ; Curators of the CIP; CIP 105407
* These data were automatically processed and therefore are not curated

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Anaerovibrio lipolyticus DSM 3074 DSM 3074

Anaerovibrio lipolyticus DSM 3074 DSM 3074

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