Centipeda periodontii (DSM 2778, ATCC 35019, CIP 105322)

Name: Centipeda periodontii (DSM 2778, ATCC 35019, CIP 105322)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17118

Type strain

Strain Designation LL 2383

Culture col. no. DSM 2778 ATCC 35019 CIP 105322 CCUG 44586 LL 2383

NCBI tax ID(s) 888060 82203

Special Collections DSMZ CCUG CIP

Links

Centipeda periodontii LL 2383 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from human peridontal lesions.

Gram-negative rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 40821

ATCC 35019,CIP 105322,DSM 2778,CCUG 44586,BCRC 14418,CCRC 14418

@ref 20215

Last LPSN update 2025-12-16 09:51:00

Domain Bacillati

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Selenomonadaceae

Genus Centipeda

Species Centipeda periodontii

Full scientific name Centipeda periodontii Lai et al. 1983

BacDive ID	Other strains from **Centipeda periodontii** (1)	Type strain
17119	C. periodontii LL 2021, DSM 2779

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
121680	negative	rod-shaped

Colony morphology

@ref	Incubation period
56393	3 days
121680

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1220	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
1220	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
35179	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
121680	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1220	positive	growth	37	mesophilic
35179	positive	growth	37	mesophilic
56393	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
1220	anaerobe
56393	anaerobe
125439	anaerobe

Antibiotic resistance

@ref	ChEBI	Metabolite	Is antibiotic	Is sensitive	Is resistant
121680	6909	metronidazole

Fatty acid profile

Metadata FA analysis

@ref

56393

Fatty acid	Percentage	ECL
C15:0	20.5	15
C13:0	14	13
C13:0 3OH/C15:1 i I/H	10.7	14.469
C15:1 ω8c	8.2	14.792
C18:1 DMA 17.252	4.8	17.252
C14:0 3OH/C16:1 ISO I	4.7	15.485
C16:0 2OH	3.9	17.233
C17:1 ω8c	3.4	16.792
C17:1 ω9c	3.3	16.773
C11:0	3.2	11
C16:1 ω11c	3.1	15.757
C17:0	2.7	17
C18:1 ISO H	2.4	17.46
C18:2 ω6,9c/C18:0 ANTE	1.9	17.724
C14:0	1.5	14
C16:0	1.5	16
C18:0	1.3	18
C12:0	1.2	12
C18:1 ω9c	1.2	17.769
Unidentified	1	13.935
Unidentified	0.9	13.49
C19:1 ω11c/19:1 ω9c	0.8	18.762
Unidentified	0.6	16.237
Unidentified	0.5	15.259
Unidentified	0.5	15.957
Unidentified	0.4	12.941
C15:1 ω6c	0.4	14.856
Unidentified	0.4	14.177
C12:0 ISO	0.4	11.608
Unidentified	0.3	12.778

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body-Site	#Oral cavity and airways
#Host Body-Site	#Other

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
1220	human peridontal lesions	USA	USA	North America
56393	Human periodontal lesions	USA	USA	North America
121680	Human, Periodontal lesions	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AJ010963 (>99% sequence identity) for Selenomonas from Microbeatlas

Aquatic Samples
Soil Samples
Animal Samples	10
Plant Samples
Total Samples	10

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1220	2	Risk group (German classification) According to TRBA 466
121680	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM21397v1 assembly for Centipeda periodontii DSM 2778	scaffold	GCA_000213975	888060.3	651324021	888060	65.19

Genome browser: GCA_000213975

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Centipeda periodontii gene for 16S rRNA, partial sequence	D89883	1462		888060
20218	Centipeda periodontii DSM 2778(T), 16S rRNA gene	AJ010963	1494		888060

GC content

1220

GC-content (mol%)53.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Centipeda periodontii DSM 2778
NCBI: GCA_000213975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	80.20	no
125439	motility	BacteriaNetⓘ	no	70.40	no
125439	gram_stain	BacteriaNetⓘ	positive	84.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Centipeda periodontii DSM 2778 DSM 2778
NCBI: GCA_000213975.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	85.30	no
125438	anaerobic	anaerobicⓘ	yes	89.23	yes
125438	aerobic	aerobicⓘ	no	93.08	yes
125438	spore-forming	spore-formingⓘ	no	69.41	no
125438	thermophilic	thermophileⓘ	no	78.12	yes
125438	flagellated	motile2+ⓘ	yes	61.97	no

Literature

Title	Authors	Journal	DOI	Year
CMG-biotools, a free workbench for basic comparative microbial genomics.	Vesth T, Lagesen K, Acar O, Ussery D.	PLoS One	10.1371/journal.pone.0060120	2013
Filifactor alocis--involvement in periodontal biofilms.	Schlafer S, Riep B, Griffen AL, Petrich A, Hubner J, Berning M, Friedmann A, Gobel UB, Moter A.	BMC Microbiol	10.1186/1471-2180-10-66	2010
Immunosuppressive effects of Centipeda periodontii: selective cytotoxicity for lymphocytes and monocytes.	Shenker BJ, Berthold P, Dougherty P, Porter KK.	Infect Immun	10.1128/iai.55.10.2332-2340.1987	1987
Extraction and isolation of a leukotoxin from Actinobacillus actinomycetemcomitans with polymyxin B.	Tsai CC, Shenker BJ, DiRienzo JM, Malamud D, Taichman NS.	Infect Immun	10.1128/iai.43.2.700-705.1984	1984
Centipeda periodontii in human periodontitis.	Rams TE, Hawley CE, Whitaker EJ, Degener JE, van Winkelhoff AJ	Odontology	10.1007/s10266-014-0166-1	2014
Isolation and characterization of lipopolysaccharide from Centipeda periodontii ATCC 35019.	Kokeguchi S, Tsutsui O, Kato K, Matsumura T	Oral Microbiol Immunol	10.1111/j.1399-302x.1990.tb00237.x	1990

References

#1220	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2778
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#35179	; Curators of the CIP;
#56393	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44586
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121680	Collection of Institut Pasteur ; Curators of the CIP; CIP 105322
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Centipeda periodontii (DSM 2778, ATCC 35019, CIP 105322)

Name and taxonomic classification