Name: Centipeda periodontii LL 2383
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17118

Type strain:

Species: Centipeda periodontii

Strain Designation: LL 2383

Culture col. no.: DSM 2778, ATCC 35019, CIP 105322, CCUG 44586

Strain history: CIP <- 1997, DSM <- P.A. Dougherty: strain LL 2383

NCBI tax ID(s): 888060 (strain), 82203 (species)

SI-ID 40821

ATCC 35019, CIP 105322, DSM 2778, CCUG 44586, BCRC 14418, CCRC 14418

Special Collections

Other strains from Centipeda periodontii

Section

Centipeda periodontii LL 2383 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human peridontal lesions.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Selenomonadales*
	Family	*Selenomonadaceae*
	Genus	*Centipeda*
	Species	**Centipeda periodontii**
	Full Scientific Name (LPSN)	Centipeda periodontii Lai et al. 1983

Information on morphological and physiological properties Morphology

[Ref.: #121680]	Gram stain	negative

[Ref.: #121680]	Cell shape	rod-shaped

[Ref.: #121680]	Motility	no

[Ref.: #56393]

Incubation period

3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1220]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #1220]

Culture medium growth

[Ref.: #1220]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1220]

Culture medium composition

expand / minimize

[Ref.: #1220]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #1220]

Culture medium growth

[Ref.: #1220]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1220]

Culture medium composition

expand / minimize

[Ref.: #35179]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #35179]

Culture medium growth

[Ref.: #35179]

Culture medium composition

expand / minimize

[Ref.: #121680]

Culture medium

CIP Medium 20

[Ref.: #121680]

Culture medium growth

[Ref.: #121680]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1220]	growth	37 °C
[Ref.: #35179]	growth	37 °C
[Ref.: #56393]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1220]	Oxygen tolerance	anaerobe
[Ref.: #56393]	Oxygen tolerance	anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %90

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121680]		metronidazole ChEBI	yes	no

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #56393]

Fatty acid	Percentage	ECL
C15:0	20.5	15
C13:0	14	13
C13:0 3OH/C15:1 i I/H	10.7	14.469
C15:1 ω8c	8.2	14.792
C18:1 DMA 17.252	4.8	17.252
C14:0 3OH/C16:1 ISO I	4.7	15.485
C16:0 2OH	3.9	17.233
C17:1 ω8c	3.4	16.792
C17:1 ω9c	3.3	16.773
C11:0	3.2	11
C16:1 ω11c	3.1	15.757
C17:0	2.7	17
C18:1 ISO H	2.4	17.46
C18:2 ω6,9c/C18:0 ANTE	1.9	17.724
C14:0	1.5	14
C16:0	1.5	16
C18:0	1.3	18
C12:0	1.2	12
C18:1 ω9c	1.2	17.769
Unidentified	1	13.935
Unidentified	0.9	13.49
C19:1 ω11c/19:1 ω9c	0.8	18.762
Unidentified	0.6	16.237
Unidentified	0.5	15.259
Unidentified	0.5	15.957
Unidentified	0.4	12.941
C15:1 ω6c	0.4	14.856
Unidentified	0.4	14.177
C12:0 ISO	0.4	11.608
Unidentified	0.3	12.778

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1220]	Sample type/isolated from	human peridontal lesions
[Ref.: #1220]	Country	USA
[Ref.: #1220]	Country ISO 3 Code	USA
[Ref.: #1220]	Continent	North America

[Ref.: #56393]	Sample type/isolated from	Human periodontal lesions
[Ref.: #56393]	Geographic location (country and/or sea, region)	Pennsylvania
[Ref.: #56393]	Country	USA
[Ref.: #56393]	Country ISO 3 Code	USA
[Ref.: #56393]	Continent	North America

[Ref.: #121680]	Sample type/isolated from	Human, Periodontal lesions
[Ref.: #121680]	Geographic location (country and/or sea, region)	Pennsylvania
[Ref.: #121680]	Country	United States of America
[Ref.: #121680]	Country ISO 3 Code	USA
[Ref.: #121680]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Mouth
#Host Body-Site	#Other	#Wound

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ010963 (>99% sequence identity) for Selenomonas from Microbeatlas

Aquatic Samples
Soil Samples
Animal Samples	10
Plant Samples
Total Samples	10

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1220]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121680]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Centipeda periodontii DSM 2778(T), 16S rRNA gene	AJ010963	1494	GenBank ENA	888060 tax ID	*
[Ref.: #20218]	Centipeda periodontii gene for 16S rRNA, partial sequence	D89883	1462	GenBank ENA	888060 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Centipeda periodontii DSM 2778	GCA_000213975	scaffold	GenBank ENA	888060 tax ID	*
[Ref.: #66792]	Centipeda periodontii DSM 2778	888060.3	wgs	PATRIC	888060 tax ID	*
[Ref.: #66792]	Centipeda periodontii DSM 2778	651324021	draft	JGI IMG/M	888060 tax ID	*

[Ref.: #1220]

GC-content

53.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Centipeda periodontii DSM 2778 DSM 2778 NCBI: GCA_000213975.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	90	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Centipeda periodontii DSM 2778 DSM 2778 NCBI: GCA_000213975.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	85.296	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	89.231	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.077	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	69.407	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	78.116	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	61.971	no

Availability in culture collections External links

[Ref.: #1220]

Culture collection no.

DSM 2778, ATCC 35019, CIP 105322, CCUG 44586

[Ref.: #86118]

SI-ID 40821

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Centipeda periodontii in human periodontitis.	Rams TE, Hawley CE, Whitaker EJ, Degener JE, van Winkelhoff AJ	Odontology	10.1007/s10266-014-0166-1	2014	*
Phylogeny	Isolation and characterization of lipopolysaccharide from Centipeda periodontii ATCC 35019.	Kokeguchi S, Tsutsui O, Kato K, Matsumura T	Oral Microbiol Immunol	10.1111/j.1399-302x.1990.tb00237.x	1990	*

References

#1220

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2778

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35179 ; Curators of the CIP;
#56393 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44586

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86118

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40821.1 )

#121680 Collection of Institut Pasteur ; Curators of the CIP; CIP 105322
* These data were automatically processed and therefore are not curated

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Centipeda periodontii DSM 2778 DSM 2778

Centipeda periodontii DSM 2778 DSM 2778

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