Strain identifier
BacDive ID: 17117
Type strain: 
Species: Anaerovibrio lipolyticus
Strain Designation: 5S, 7553
Strain history: CIP <- 1998, DSMZ <- ATCC <- VPI: strain 7553 <- P.N. Hobson: strain 5S
NCBI tax ID(s): 1120997 (strain), 82374 (species)
version 8.1 (current version)
General
@ref: 1293
BacDive-ID: 17117
DSM-Number: 3074
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Anaerovibrio lipolyticus 5S is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sheep rumen.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 82374 | species |
| 1120997 | strain |
strain history
| @ref | history |
|---|---|
| 1293 | <- ATCC <- W. E. C. Moore, Virginia Polytechnical Institute and State University, Blacksburg, V., USA; VPI 7553 <- P. N. Hobson, Rowett Inst. Nutrition and Health, Aberdeen, United Kingdom; 5S |
| 120620 | CIP <- 1998, DSMZ <- ATCC <- VPI: strain 7553 <- P.N. Hobson: strain 5S |
doi: 10.13145/bacdive17117.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Selenomonadaceae
- genus: Anaerovibrio
- species: Anaerovibrio lipolyticus
- full scientific name: Anaerovibrio lipolyticus corrig. Hungate 1966 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Anaerovibrio lipolytica
@ref: 1293
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Selenomonadaceae
genus: Anaerovibrio
species: Anaerovibrio lipolyticus
full scientific name: Anaerovibrio lipolyticus Hungate 1966
strain designation: 5S, 7553
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 69480 | negative | 99.912 | ||
| 120620 | negative | rod-shaped | no |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 39285 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
| 1293 | RUMEN BACTERIA MEDIUM (DSMZ Medium 330) | yes | Name: RUMEN BACTERIA MEDIUM (DSMZ Medium 330) Composition: Na2CO3 4.0 g/l Trypticase peptone 2.0 g/l D-Glucose 0.5 g/l Yeast extract 0.5 g/l Maltose 0.5 g/l Cellobiose 0.5 g/l Starch 0.5 g/l Glycerol 0.5 g/l NaCl 0.456 g/l K2HPO4 0.3 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l (NH4)2SO4 0.228 g/l KH2PO4 0.228 g/l MgSO4 x 7 H2O 0.095 g/l CaCl2 x 2 H2O 0.0608 g/l Hemin 0.001 g/l Sodium resazurin 0.0005 g/l NaOH None Distilled water | https://mediadive.dsmz.de/medium/330 |
| 120620 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1293 | positive | growth | 37 | mesophilic |
| 39285 | positive | growth | 37 | mesophilic |
| 120620 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 1293 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.427 |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 1293 | sheep rumen |
| 120620 | Animal, Sheep, rumen |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Caprinae (Sheep/Goat) |
| #Host Body-Site | #Organ | #Rumen |
taxonmaps
- @ref: 69479
- File name: preview.99_4372.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15858;96_2190;97_2649;98_3285;99_4372&stattab=map
- Last taxonomy: Anaerovibrio lipolyticus subclade
- 16S sequence: AB034191
- Sequence Identity:
- Total samples: 5375
- soil counts: 51
- aquatic counts: 120
- animal counts: 5134
- plant counts: 70
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 1293 | 1 | Risk group (German classification) |
| 120620 | 2 | Risk group (French classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Anaerovibrio lipolytica DSM 3074(T), 16S rRNA gene | AJ010959 | 1526 | ena | 1120997 |
| 1293 | Anaerovibrio lipolytica gene for 16S rRNA, partial sequence | AB034191 | 1587 | ena | 1120997 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerovibrio lipolyticus DSM 3074 | GCA_900141865 | scaffold | ncbi | 1120997 |
| 66792 | Anaerovibrio lipolyticus 5S | GCA_000803025 | contig | ncbi | 82374 |
| 66792 | Anaerovibrio lipolyticus 5S | 82374.4 | wgs | patric | 82374 |
| 66792 | Anaerovibrio lipolyticus DSM 3074 strain DSM 3074 | 1120997.3 | wgs | patric | 1120997 |
| 66792 | Anaerovibrio lipolyticus 5S | 2630968883 | draft | img | 82374 |
| 66792 | Anaerovibrio lipolyticus DSM 3074 | 2585428091 | draft | img | 1120997 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 82.789 | no |
| flagellated | no | 69.554 | no |
| gram-positive | no | 96.453 | no |
| anaerobic | yes | 99.628 | yes |
| aerobic | no | 98.418 | yes |
| halophile | no | 95.199 | no |
| spore-forming | no | 76.918 | no |
| thermophile | no | 93.829 | yes |
| glucose-util | yes | 61.229 | no |
| glucose-ferment | no | 51.587 | no |
External links
@ref: 1293
culture collection no.: DSM 3074, ATCC 33276, CIP 105407, VPI 7553
straininfo link
- @ref: 86117
- straininfo: 45950
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1293 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3074) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3074 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 39285 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17424 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86117 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45950.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 120620 | Curators of the CIP | Collection of Institut Pasteur (CIP 105407) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105407 |