Name: Actinoallomurus radicium K08-0182
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17016

Type strain:

Species: Actinoallomurus radicium

Strain Designation: K08-0182

Culture col. no.: DSM 45523, JCM 17294, NBRC 107678

Strain history: A. Matsumoto K08-0182.

NCBI tax ID(s): 877472 (species)

SI-ID 397765

DSM 45523

Special Collections

Section

Actinoallomurus radicium K08-0182 is an aerobe, spore-forming bacterium that was isolated from root of a Mondo grass.

spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinoallomurus*
	Species	**Actinoallomurus radicium**
	Full Scientific Name (LPSN)	Actinoallomurus radicium Matsumoto et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30083]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17497]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #17497]

Culture medium growth

[Ref.: #17497]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17497]

Culture medium composition

expand / minimize

[Ref.: #17497]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #17497]

Culture medium growth

[Ref.: #17497]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17497]

Culture medium composition

expand / minimize

[Ref.: #17497]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #17497]

Culture medium growth

[Ref.: #17497]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17497]

Culture medium composition

expand / minimize

[Ref.: #17497]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #17497]

Culture medium growth

[Ref.: #17497]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17497]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17497]	growth	28 °C
[Ref.: #30083]	growth	12-36 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30083]			growth	05-07

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30083]

Oxygen tolerance

aerobe

[Ref.: #30083]

Ability of spore formation

yes

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30083]		glucose ChEBI	+	carbon source
[Ref.: #30083]		xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30083]	acid phosphatase	+	3.1.3.2
[Ref.: #30083]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30083]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17497]	Sample type/isolated from	root of a Mondo grass
[Ref.: #17497]	Geographic location (country and/or sea, region)	Kanagawa Prefecture
[Ref.: #17497]	Country	Japan
[Ref.: #17497]	Country ISO 3 Code	JPN
[Ref.: #17497]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Root of a mondo grass (Ophiopogon japonicus)
[Ref.: #67770]	Host species	Ophiopogon japonicus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanagawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17497]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17497]	Actinoallomurus radicium gene for 16S rRNA, partial sequence	AB578855	1487	GenBank ENA	877472 tax ID

[Ref.: #17497]	GC-content	72 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30083]	GC-content	72-73 mol%
[Ref.: #67770]	GC-content	72-73 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #17497]

Culture collection no.

DSM 45523, JCM 17294, NBRC 107678

[Ref.: #86017]

SI-ID 397765

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoallomurus radicium sp. nov., isolated from the roots of two plant species.	Matsumoto A, Fukuda A, Inahashi Y, Omura S, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.029181-0	2011	*

References

#17497

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45523

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30083

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26440 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#86017

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397765.1 )

#26440

IJSEM 295 2012 ( DOI 10.1099/ijs.0.029181-0 , PubMed 21421931 )

* These data were automatically processed and therefore are not curated

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