Name: Actinoallomurus oryzae DSM 45651
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17015

Type strain:

Species: Actinoallomurus oryzae

Culture col. no.: DSM 45651, BCC 31373, NBRC 105246, GMKU 370, JCM 17933, TBRC 390

Strain history: BCC 31373 <-- A. Thamchaipenet GMKU 370.

NCBI tax ID(s): 502180 (species)

SI-ID 408141

DSM 45651

Special Collections

Section

Actinoallomurus oryzae DSM 45651 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from roots of a Thai jasmine rice plant .

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinoallomurus*
	Species	**Actinoallomurus oryzae**
	Full Scientific Name (LPSN)	Actinoallomurus oryzae Indananda et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29849]	Gram stain	positive

[Ref.: #21388]	Colony color	Brown beige (1011)
[Ref.: #21388]	Incubation period	10-14 days
[Ref.: #21388]	Cultivation medium used	ISP 2

[Ref.: #21388]	Colony color	Zinc yellow (1018)
[Ref.: #21388]	Incubation period	10-14 days
[Ref.: #21388]	Cultivation medium used	ISP 3

[Ref.: #21388]	Colony color	Beige (1001)
[Ref.: #21388]	Incubation period	10-14 days
[Ref.: #21388]	Cultivation medium used	ISP 5

[Ref.: #21388]	Colony color	Sand yellow (1002)
[Ref.: #21388]	Incubation period	10-14 days
[Ref.: #21388]	Cultivation medium used	ISP 7

[Ref.: #21388]	Colony color	Sand yellow (1002) â€“ Olive brown (8008)
[Ref.: #21388]	Incubation period	10-14 days
[Ref.: #21388]	Cultivation medium used	Suter with tyrosine

[Ref.: #21388]	Colony color	Sand yellow (1002) â€“ Olive brown (8008)
[Ref.: #21388]	Incubation period	10-14 days
[Ref.: #21388]	Cultivation medium used	Suter without tyrosine

[Ref.: #21388]	Incubation period	10-14 days
[Ref.: #21388]	Cultivation medium used	ISP 4

[Ref.: #29849]

Pigment production

[Ref.: #21388]	Multicellular complex forming ability	no
[Ref.: #21388]	Medium Name (multicellularity)	ISP 2

[Ref.: #21388]	Multicellular complex forming ability	no
[Ref.: #21388]	Medium Name (multicellularity)	ISP 3

[Ref.: #21388]	Multicellular complex forming ability	no
[Ref.: #21388]	Medium Name (multicellularity)	ISP 4

[Ref.: #21388]	Multicellular complex forming ability	no
[Ref.: #21388]	Medium Name (multicellularity)	ISP 5

[Ref.: #21388]	Multicellular complex forming ability	no
[Ref.: #21388]	Medium Name (multicellularity)	ISP 7

[Ref.: #21388]	Multicellular complex forming ability	no
[Ref.: #21388]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21388]	Multicellular complex forming ability	no
[Ref.: #21388]	Medium Name (multicellularity)	Suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17976]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #17976]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #17976]

Culture medium growth

[Ref.: #17976]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #21388]

Culture medium

ISP 2

[Ref.: #21388]

Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #21388]

Culture medium

ISP 3

[Ref.: #21388]

Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #21388]

Culture medium

ISP 4

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Culture medium growth

[Ref.: #21388]

Culture medium composition

expand / minimize

[Ref.: #21388]

Culture medium

ISP 5

[Ref.: #21388]

Culture medium growth

[Ref.: #21388]

Culture medium composition

expand / minimize

[Ref.: #21388]

Culture medium

ISP 7

[Ref.: #21388]

Culture medium growth

[Ref.: #21388]

Culture medium composition

expand / minimize

[Ref.: #21388]

Culture medium

Suter with tyrosine

[Ref.: #21388]

Culture medium growth

[Ref.: #21388]

Culture medium composition

expand / minimize

[Ref.: #21388]

Culture medium

Suter without tyrosine

[Ref.: #21388]

Culture medium growth

[Ref.: #21388]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17976]	growth	28 °C
[Ref.: #29849]	growth	21-45 °C
[Ref.: #29849]	optimum	35.5 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29849]			optimum	7
[Ref.: #29849]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29849]

Oxygen tolerance

aerobe

[Ref.: #29849]

Ability of spore formation

yes

	Salt		Salt conc.
[Ref.: #21388]	NaCl	maximum	2.5	%
[Ref.: #29849]	NaCl	growth	0-4	%
[Ref.: #29849]	NaCl	optimum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(H₂), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21388]	arabinose ChEBI	+
[Ref.: #21388]	cellulose ChEBI	+
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21388]	fructose ChEBI	+
[Ref.: #29849]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21388]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #29849]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29849]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #21388]	mannose ChEBI	+
[Ref.: #29849]	mannose ChEBI	+	carbon source
[Ref.: #21388]	myo-inositol ChEBI	+
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #21388]	raffinose ChEBI	+
[Ref.: #29849]	raffinose ChEBI	+	carbon source
[Ref.: #21388]	rhamnose ChEBI	+
[Ref.: #29849]	rhamnose ChEBI	+	carbon source
[Ref.: #29849]	sorbitol ChEBI	+	carbon source
[Ref.: #21388]	sucrose ChEBI	-
[Ref.: #29849]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29849]	trehalose ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21388]	xylose ChEBI	+
[Ref.: #29849]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucuronidase	+	3.2.1.31	* from API Coryne, API zym
[Ref.: #29849]	catalase	+	1.11.1.6
[Ref.: #29849]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21388]	513	-	-	+	-	+	-	+	+	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21388]	1029	not determinedn.d.	-	+/-	+	-	+	+	+/-	+/-	-	+	+	+	+	+	+	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17976]	Sample type/isolated from	roots of a Thai jasmine rice plant (Oryza sativa)
[Ref.: #17976]	Geographic location (country and/or sea, region)	Pathum Thani Province, Pathum Rice Research Center
[Ref.: #17976]	Country	Thailand
[Ref.: #17976]	Country ISO 3 Code	THA
[Ref.: #17976]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Roots of a Thai jasmine rice plant (Oryza sativa L. 'KDML 105') from Pathum Thani Rice Research Center
[Ref.: #67770]	Host species	Oryza sativa
[Ref.: #67770]	Geographic location (country and/or sea, region)	Pathum Thani Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17976]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17976]	Actinoallomurus oryzae strain GMKU 370 16S ribosomal RNA gene, partial sequence	EU420071	1468	GenBank ENA	502180 tax ID

[Ref.: #17976]	GC-content	65.4 mol%
[Ref.: #67770]	GC-content	65.4 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #17976]

Culture collection no.

DSM 45651, BCC 31373, NBRC 105246, GMKU 370, JCM 17933, TBRC 390

[Ref.: #86016]

SI-ID 408141

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoallomurus oryzae sp. nov., an endophytic actinomycete isolated from roots of a Thai jasmine rice plant.	Indananda C, Thamchaipenet A, Matsumoto A, Inahashi Y, Duangmal K, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.022509-0	2010	*

References

#17976

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45651

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21388

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29849

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26223 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#86016

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408141.1 )

#26223

IJSEM 737 2011 ( DOI 10.1099/ijs.0.022509-0 , PubMed 20418407 )

* These data were automatically processed and therefore are not curated

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