Name: Thermoactinomyces vulgaris T 106
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16772

Type strain:

Species: Thermoactinomyces vulgaris

Strain Designation: T 106, T-106

Culture col. no.: DSM 43796, ATCC 27868, CBS 339.74, CCM 2817, CUB 749, DSM 43352, IFO 15851, JCM 3180, JCM 3220, KCC A-0180, NBRC 15851, NCIB 11249, CCUG 9288, BCRC 13432, CECT 3219, IMSNU 22108, KCTC 9557, NCIMB 11249, NCIMB 11369, NRRL B-8109

Strain history: KCC A-0180 <-- V. P. Kurup T-106.

NCBI tax ID(s): 2026 (species)

SI-ID 40366

ATCC 27868, CCUG 9288, DSM 43796, CCM 2817, DSM 43352, IFO 15851, NCIB 11249, JCM 3180, CCRC 13432, JCM 3220, NCIMB 11249, NRRL B-8109, NCIMB11369, CBS 339.74, KCTC 9557, CECT 3219, NBRC 15851, BCRC 13432, KACC 20065, NBIMCC 3652

Special Collections

Other strains from Thermoactinomyces vulgaris

Section

Thermoactinomyces vulgaris T 106 is an aerobe human pathogen that was isolated from air conditioner.

aerobe
human pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Thermoactinomycetaceae*
	Genus	*Thermoactinomyces*
	Species	**Thermoactinomyces vulgaris**
	Full Scientific Name (LPSN)	Thermoactinomyces vulgaris Tsiklinsky 1899 (Approved Lists 1980)

Synonym

Thermoactinomyces candidus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11251]

Culture medium

CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550)

[Ref.: #11251]

Culture medium growth

[Ref.: #11251]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11251]

Culture medium composition

expand / minimize

[Ref.: #11251]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #11251]

Culture medium growth

[Ref.: #11251]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #11251]	growth	50 °C
[Ref.: #45186]	growth	50 °C
[Ref.: #67770]	growth	50 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #45186]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-7

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #45186]

Fatty acid	Percentage	ECL
C15:0 ISO	65	14.621
C17:0 iso	27.3	16.629
C16:0 iso	4.1	15.626

Metadata FA analysis

Reference

[Ref.: #45186]

Fatty acid	Percentage	ECL
C15:0 ISO	60.5	14.621
C17:0 iso	24.5	16.629
C16:0 iso	4.5	15.626
Unidentified	3	13.238
C17:0 anteiso	2.3	16.722
C15:0 ANTEISO	2.3	14.711
C15:0	1.6	15
C16:0	1.4	16

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	vitamin B12 metabolism	88.24	30 of 34
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	methionine metabolism	80.77	21 of 26
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	purine metabolism	71.28	67 of 94
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	degradation of sugar acids	68	17 of 25
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	molybdenum cofactor biosynthesis	55.56	5 of 9
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	grixazone biosynthesis	50	1 of 2
[Ref.: #66794]	degradation of sugar alcohols	50	8 of 16
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	starch degradation	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	carotenoid biosynthesis	27.27	6 of 22
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11251]	Sample type/isolated from	air conditioner

[Ref.: #45186]	Sample type/isolated from	Air conditioner

[Ref.: #67770]	Sample type/isolated from	Air conditioner
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Air conditioner
#Environmental	#Air	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF138732 (>99% sequence identity) for Thermoactinomyces from Microbeatlas

Aquatic Samples	4962
Soil Samples	18726
Animal Samples	9694
Plant Samples	5349
Total Samples	38731

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11251]	Pathogenicity (human)	yes, in single cases
[Ref.: #11251]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermoactinomyces candidus KCTC 9557 16S ribosomal RNA gene, complete sequence	AF138732	1504	GenBank ENA	2026 tax ID
[Ref.: #67770]	Thermoactinomyces candidus (NCIMB 11249) ribosomal RNA small subunit	M77490	1418	GenBank ENA	2026 tax ID

Availability in culture collections External links

[Ref.: #11251]

Culture collection no.

DSM 43796, ATCC 27868, CBS 339.74, CCM 2817, CUB 749, DSM 43352, IFO 15851, JCM 3180, JCM 3220, KCC A-0180, NBRC 15851, NCIB 11249, CCUG 9288, BCRC 13432, CECT 3219, IMSNU 22108, KCTC 9557, NCIMB 11249, NCIMB 11369, NRRL B-8109

[Ref.: #85789]

SI-ID 40366

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	DNA-DNA relatedness among Thermoactinomyces species: Thermoactinomyces candidus as a synonym of Thermoactinomyces vulgaris and Thermoactinomyces thalpophilus as a synonym of Thermoactinomyces sacchari.	Yoon JH, Shin YK, Park YH	Int J Syst Evol Microbiol	10.1099/00207713-50-5-1905	2000	*
Phylogeny	Phylogenetic analysis of the genus Thermoactinomyces based on 16S rDNA sequences.	Yoon JH, Park YH	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1081	2000	*

References

#11251

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43796

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#45186 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 9288

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85789

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40366.1 )

* These data were automatically processed and therefore are not curated

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