Strain identifier

BacDive ID: 16772

Type strain: No

Species: Thermoactinomyces vulgaris

Strain Designation: T 106, T-106

Strain history: KCC A-0180 <-- V. P. Kurup T-106.

NCBI tax ID(s): 2026 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 11251

BacDive-ID: 16772

DSM-Number: 43796

keywords: 16S sequence, Bacteria, aerobe, thermophilic, human pathogen

description: Thermoactinomyces vulgaris T 106 is an aerobe, thermophilic human pathogen that was isolated from air conditioner.

NCBI tax id

  • NCBI tax id: 2026
  • Matching level: species

strain history

@refhistory
11251<- V.P. Kurup, T-106 <- NCIB <- McCarthy, CUB
67770KCC A-0180 <-- V. P. Kurup T-106.

doi: 10.13145/bacdive16772.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Thermoactinomycetaceae
  • genus: Thermoactinomyces
  • species: Thermoactinomyces vulgaris
  • full scientific name: Thermoactinomyces vulgaris Tsiklinsky 1899 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Thermoactinomyces candidus

@ref: 11251

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Thermoactinomycetaceae

genus: Thermoactinomyces

species: Thermoactinomyces vulgaris

full scientific name: Thermoactinomyces vulgaris Tsilinsky 1899

strain designation: T 106, T-106

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11251CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550)yeshttps://mediadive.dsmz.de/medium/550Name: CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550) Composition: Czapek Dox agar 48.0 g/l Agar 20.0 g/l Casamino acids 6.1 g/l Yeast extract 2.0 g/l Tryptophan 0.02 g/l Distilled water
11251CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium83.pdf

culture temp

@refgrowthtypetemperaturerange
11251positivegrowth50thermophilic
45186positivegrowth50thermophilic
67770positivegrowth50thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 45186
  • oxygen tolerance: aerobe

observation

  • @ref: 67770
  • observation: quinones: MK-7

fatty acid profile

  • @reffatty acidpercentageECL
    45186C15:0 ISO6514.621
    45186C16:0 iso4.115.626
    45186C17:0 iso27.316.629
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    45186C15:01.615
    45186C16:01.416
    45186C15:0 ANTEISO2.314.711
    45186C15:0 ISO60.514.621
    45186C16:0 iso4.515.626
    45186C17:0 anteiso2.316.722
    45186C17:0 iso24.516.629
    45186Unidentified313.238
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

@refsample type
11251air conditioner
45186Air conditioner
67770Air conditioner

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Air conditioner
#Environmental#Air

taxonmaps

  • @ref: 69479
  • File name: preview.99_3092.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_1615;97_1932;98_2375;99_3092&stattab=map
  • Last taxonomy: Thermoactinomyces
  • 16S sequence: AF138732
  • Sequence Identity:
  • Total samples: 38731
  • soil counts: 18726
  • aquatic counts: 4962
  • animal counts: 9694
  • plant counts: 5349

Safety information

risk assessment

  • @ref: 11251
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Thermoactinomyces candidus KCTC 9557 16S ribosomal RNA gene, complete sequenceAF1387321504ena2026
67770Thermoactinomyces candidus (NCIMB 11249) ribosomal RNA small subunitM774901418ena2026

External links

@ref: 11251

culture collection no.: DSM 43796, ATCC 27868, CBS 339.74, CCM 2817, CUB 749, DSM 43352, IFO 15851, JCM 3180, JCM 3220, KCC A-0180, NBRC 15851, NCIB 11249, CCUG 9288, BCRC 13432, CECT 3219, IMSNU 22108, KCTC 9557, NCIMB 11249, NCIMB 11369, NRRL B-8109

straininfo link

  • @ref: 85789
  • straininfo: 40366

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10843048Phylogenetic analysis of the genus Thermoactinomyces based on 16S rDNA sequences.Yoon JH, Park YHInt J Syst Evol Microbiol10.1099/00207713-50-3-10812000DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Micromonosporaceae/*classification/genetics, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNAGenetics
Phylogeny11034503DNA-DNA relatedness among Thermoactinomyces species: Thermoactinomyces candidus as a synonym of Thermoactinomyces vulgaris and Thermoactinomyces thalpophilus as a synonym of Thermoactinomyces sacchari.Yoon JH, Shin YK, Park YHInt J Syst Evol Microbiol10.1099/00207713-50-5-19052000DNA, Bacterial/*genetics, Micromonosporaceae/*classification/*genetics, *Nucleic Acid Hybridization

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11251Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43796)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43796
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
45186Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 9288)https://www.ccug.se/strain?id=9288
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85789Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40366.1StrainInfo: A central database for resolving microbial strain identifiers