Thermohydrogenium kirishiense (DSM 11055, ZE-7)

Name: Thermohydrogenium kirishiense (DSM 11055, ZE-7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16691

Type strain

Strain Designation ZE-7

Culture col. no. DSM 11055 ZE-7

NCBI tax ID(s) 937254

Special Collections DSMZ

Links

Thermohydrogenium kirishiense ZE-7 is an anaerobe, thermophilic prokaryote that was isolated from industrial yeast biomass.

anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49008

VKM B-2147,DSM 11055

@ref 20215

Last LPSN update 2025-12-16 09:50:54

Domain Bacillati

Phylum Bacillota

Class Syntrophomonadia

Order Syntrophomonadales

Family Syntrophomonadaceae

Genus Thermohydrogenium

Species Thermohydrogenium kirishiense

Full scientific name Thermohydrogenium kirishiense Zacharova et al. 1996

BacDive ID	Other strains from **Thermohydrogenium kirishiense** (2)	Type strain
16692	T. kirishiense ZE-16, DSM 11056
16693	T. kirishiense ZE-19, DSM 11057

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4174	CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640)		Medium recipe at MediaDive	Name: CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640; with strain-specific modifications) Composition: D-Glucose 5.0 g/l Trypticase peptone 2.0 g/l K2HPO4 1.5 g/l Yeast extract 1.0 g/l NH4Cl 0.9 g/l NaCl 0.9 g/l KH2PO4 0.75 g/l L-Cysteine HCl x H2O 0.75 g/l MgCl2 x 6 H2O 0.4 g/l HCl 0.0025 g/l FeCl3 x 6 H2O 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4174	positive	growth	60	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
4174	anaerobe
125439	anaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Industrial
#Host	#Yeast

Isolation

@ref	Sample type	Country	Country ISO 3 Code
4174	industrial yeast biomass	Russia	RUS

Taxonmaps

69479

Global distribution of 16S sequence FR749965 (>99% sequence identity) for Clostridia from Microbeatlas

Aquatic Samples	222
Soil Samples	73
Animal Samples	1426
Plant Samples	22
Total Samples	1743

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4174	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM434346v1 assembly for Thermohydrogenium kirishiense DSM 11055	contig	GCA_004343465	937254.3	2795386141	937254	30.53

Genome browser: GCA_004343465

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
4174	Thermohydrogenium kirishiense partial 16S rRNA gene, type strain DSM 11055T, clone 1	FR749963	1579	937254
4174	Thermohydrogenium kirishiense partial 16S rRNA gene, type strain DSM 11055T, clone 2	FR749964	1506	937254
4174	Thermohydrogenium kirishiense partial 16S rRNA gene, type strain DSM 11055T, clone 3	FR749965	1508	937254

GC content

@ref	GC-content (mol%)	Method
4174	33.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thermohydrogenium kirishiense DSM 11055
IMG: 2795386141

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	76.60	no
125439	motility	BacteriaNetⓘ	yes	81.20	no
125439	gram_stain	BacteriaNetⓘ	variable	80.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermohydrogenium kirishiense strain DSM 11055
PATRIC: 937254.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	50.58	no
125438	anaerobic	anaerobicⓘ	yes	88.41	no
125438	aerobic	aerobicⓘ	no	93.99	yes
125438	spore-forming	spore-formingⓘ	yes	73.81	no
125438	thermophilic	thermophileⓘ	yes	69.37	yes
125438	flagellated	motile2+ⓘ	yes	71.39	no

Literature

Title	Authors	Journal	DOI	Year
Thermophilic fermentation enhanced by eggshell-derived hydroxyapatite for sustainable hydrogen production.	Zisha SZ, Man HC, Omar R, Rashid SA, Ping TJ, Fairuz S, Manaf A, Mumtaz T, Jamali NS.	Bioresour Bioprocess	10.1186/s40643-025-00976-4	2025

References

#4174	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11055
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thermohydrogenium kirishiense (DSM 11055, ZE-7)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004343465

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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