Name: Herbidospora cretacea JCM 8549
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 165811

Type strain:

Species: Herbidospora cretacea

Culture col. no.: JCM 8549, NRRL B-16917

Strain history: T. Itoh I-385.

NCBI tax ID(s): 28444 (species)

SI-ID 65484

JCM 8549

Special Collections

Other strains from Herbidospora cretacea

Section

Herbidospora cretacea JCM 8549 is a spore-forming, Gram-positive bacterium that was isolated from Bark of Japanese red pine .

Gram-positive
spore-forming
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Herbidospora*
	Species	**Herbidospora cretacea**
	Full Scientific Name (LPSN)	Herbidospora cretacea Kudo et al. 1993

	Synonym	Herbidospora osyris
	Synonym	Streptosporangium claviforme

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

yes Confidence in %90.808

[Ref.: #67770]

Observation

quinones: MK-10(III,IX-H₄), MK-10(H₂), MK-10(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Bark of Japanese red pine (Pinus densiflora)
[Ref.: #67770]	Host species	Pinus densiflora
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbidospora cretacea NRRL B-16917	GCA_000719065	contig	GenBank ENA	28444 tax ID

[Ref.: #67770]

GC-content

71 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Herbidospora cretacea NRRL B-16917 NCBI: GCA_000719065.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.764	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.338	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.926	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.808	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8549, NRRL B-16917

[Ref.: #114634]

SI-ID 65484

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114634

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID65484.1 )

* These data were automatically processed and therefore are not curated

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Herbidospora cretacea NRRL B-16917

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