Name: Herbidospora cretacea JCM 8549
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165811

Type strain:

Species: Herbidospora cretacea

Culture col. no.: JCM 8549, NRRL B-16917

Strain history: T. Itoh I-385.

NCBI tax ID(s): 28444 (species)

SI-ID 65484

JCM 8549

Other strains from Herbidospora cretacea

H. cretacea K-319, DSM 44071, IAM 14284, IFO ... (type strain)
H. cretacea D1, DSM 44127, IPV 2852, NBRC 15623, ...
H. cretacea DSM 45214, BCC 49353, CCTCC AA ...
H. cretacea JCM 8548
H. cretacea JCM 8550
H. cretacea JCM 8551
H. cretacea JCM 8552
H. cretacea JCM 8554
H. cretacea JCM 8555

Section

Herbidospora cretacea JCM 8549 is a mesophilic bacterium that was isolated from Bark of Japanese red pine .

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Herbidospora*
	Species	**Herbidospora cretacea**
	Full Scientific Name (LPSN)	Herbidospora cretacea Kudo et al. 1993

	Synonym	Herbidospora osyris
	Synonym	Streptosporangium claviforme

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-10(III,IX-H₄), MK-10(H₂), MK-10(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Bark of Japanese red pine (Pinus densiflora)
[Ref.: #67770]	Host species	Pinus densiflora
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Herbidospora cretacea NRRL B-16917	GCA_000719065	contig	GenBank	28444 tax ID

[Ref.: #67770]

GC-content

71 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Herbidospora cretacea NRRL B-16917 NCBI: GCA_000719065.1
[Ref.: #69480]	motile	no	91.735	no
[Ref.: #69480]	flagellated	no	98.179	no
[Ref.: #69480]	gram-positive	yes	90.558	no
[Ref.: #69480]	anaerobic	no	99.013	no
[Ref.: #69480]	halophile	no	94.462	no
[Ref.: #69480]	spore-forming	yes	95.302	no
[Ref.: #69480]	thermophile	no	98.007	yes
[Ref.: #69480]	glucose-util	yes	89.068	no
[Ref.: #69480]	aerobic	yes	93.593	no
[Ref.: #69480]	glucose-ferment	no	93.724	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8549, NRRL B-16917

[Ref.: #114634]

SI-ID 65484

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114634

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID65484.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Herbidospora cretacea in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Herbidospora cretacea NRRL B-16917

Change proposal

Change proposal