Herbidospora cretacea (JCM 8549, NRRL B-16917)

Name: Herbidospora cretacea (JCM 8549, NRRL B-16917)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165811

Type strain

Culture col. no. JCM 8549 NRRL B-16917

NCBI tax ID(s) 28444

Special Collections JCM

History JCM <-- T. Itoh I-385.

Links

Herbidospora cretacea JCM 8549 is a bacterium that was isolated from Bark of Japanese red pine .

genome sequence Bacteria

Name and taxonomic classification

SI-ID 65484

JCM 8549

@ref 20215

Last LPSN update 2026-05-29 08:45:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Herbidospora

Species Herbidospora cretacea

Full scientific name Herbidospora cretacea Kudo et al. 1993

Synonyms (2)

Streptosporangium claviforme
Herbidospora osyris

BacDive ID	Other strains from **Herbidospora cretacea** (9)	Type strain
16507	H. cretacea K-319, DSM 44071, IAM 14284, IFO 15474, JCM ... (type strain)
16508	H. cretacea D1, DSM 44127, IPV 2852, NBRC 15623, NCB ...
16509	H. cretacea DSM 45214, BCC 49353, CCTCC AA 208019, JCM ...
165810	H. cretacea JCM 8548
165812	H. cretacea JCM 8550
165813	H. cretacea JCM 8551
165814	H. cretacea JCM 8552
165815	H. cretacea JCM 8554
165816	H. cretacea JCM 8555

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.678

Spore formation

@ref	Spore formation	Confidence
125438		90.808

Observation

67770

Observationquinones: MK-10(III,IX-H₄), MK-10(H₂), MK-10(H₆)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Bark of Japanese red pine (Pinus densiflora)	Pinus densiflora	Saitama Pref.	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM71906v1 assembly for Herbidospora cretacea NRRL B-16917	contig	GCA_000719065	28444.3	2772190767	28444	58.41

GC content

@ref	GC-content (mol%)	Method
67770	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM71906v1 assembly for Herbidospora cretacea NRRL B-16917
NCBI: GCA_000719065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.68	no
125439	gram_stain	BacteriaNetⓘ	positive	89.61	no
125439	spore_formation	BacteriaNetⓘ	yes	41.13	no
125439	motility	BacteriaNetⓘ	no	79.71	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Herbidospora cretacea NRRL B-16917
NCBI: GCA_000719065.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.76	no
125438	anaerobic	anaerobicⓘ	no	94.34	no
125438	aerobic	aerobicⓘ	yes	89.93	no
125438	spore-forming	spore-formingⓘ	yes	90.81	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Genome-based analysis of non-ribosomal peptide synthetase and type-I polyketide synthase gene clusters in all type strains of the genus Herbidospora.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N.	BMC Res Notes	10.1186/s13104-015-1526-9	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Herbidospora cretacea (JCM 8549, NRRL B-16917)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000719065

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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