Herbidospora cretacea (DSM 45214, BCC 49353, CCTCC AA 208019)

Name: Herbidospora cretacea (DSM 45214, BCC 49353, CCTCC AA 208019)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16509

Type strain

Culture col. no. DSM 45214 BCC 49353 CCTCC AA 208019 JCM 16900 NBRC 106571 3 more

NCBI tax ID(s) 28444

Special Collections DSMZ JCM Wink compendium Literature strains

History DSMZ <- S.-K. Tang, YIM; YIM 65070 <- J. Li JCM <-- DSM 45214 <-- S.-K. Tang <-- J. Li YIM 65070.

Links

Herbidospora cretacea DSM 45214 is a spore-forming bacterium that builds an aerial mycelium and was isolated from surface sterilized plant sample of Osyris wightiana Wall. ex Wight.

spore-forming 16S sequence Bacteria

Name and taxonomic classification

SI-ID 364833

NBRC 106571,TBRC 193,DSM 45214,JCM 16900,LMG 28488

@ref 20215

Last LPSN update 2026-05-29 08:28:47

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Herbidospora

Species Herbidospora cretacea

Full scientific name Herbidospora cretacea Kudo et al. 1993

Synonyms (2)

Streptosporangium claviforme
Herbidospora osyris

BacDive ID	Other strains from **Herbidospora cretacea** (9)	Type strain
16507	H. cretacea K-319, DSM 44071, IAM 14284, IFO 15474, JCM ... (type strain)
16508	H. cretacea D1, DSM 44127, IPV 2852, NBRC 15623, NCB ...
165810	H. cretacea JCM 8548
165811	H. cretacea JCM 8549, NRRL B-16917
165812	H. cretacea JCM 8550
165813	H. cretacea JCM 8551
165814	H. cretacea JCM 8552
165815	H. cretacea JCM 8554
165816	H. cretacea JCM 8555

Morphology

Colony morphology

@ref	Colony color	Incubation period	Medium used
20181	Green brown (8000)	10-14 days	ISP 2
20181	Ivory (1014)	10-14 days	ISP 3
20181	Light ivory (1015)	10-14 days	ISP 4
20181	Light ivory (1015)	10-14 days	ISP 5
20181	Green brown (8000)	10-14 days	ISP 6
20181	Light ivory (1015)	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
20181	Aerial Mycelium	Green brown	ISP 2
20181			ISP 3
20181			ISP 4
20181			ISP 5
20181			ISP 6
20181			ISP 7

Pigmentation

29304

Productionno

Multimedia

@ref:	15795
multimedia content:	DSM_45214.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45214.jpg
caption:	Medium 553 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15795	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
20181	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20181	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20181	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20181	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20181	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20181	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
15795	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15795	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15795	positive	growth	28
20181	positive	optimum	28
29304	positive	growth	10-37
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
29304	positive	growth	06-08

Physiology and metabolism

Spore formation

29304

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29304	NaCl	positive	growth	0-3 %

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29304	16449 ChEBI	alanine	+	carbon source
20181	22599 ChEBI	arabinose	-
29304	17057 ChEBI	cellobiose	+	carbon source
20181	62968 ChEBI	cellulose	-
29304	4853 ChEBI	esculin	+	hydrolysis
20181	28757 ChEBI	fructose	+
29304	28757 ChEBI	fructose	+	carbon source
29304	28260 ChEBI	galactose	+	carbon source
20181	17234 ChEBI	glucose	+
29304	17754 ChEBI	glycerol	+	carbon source
29304	27570 ChEBI	histidine	+	carbon source
29304	25115 ChEBI	malate	+	carbon source
29304	17306 ChEBI	maltose	+	carbon source
20181	29864 ChEBI	mannitol	-
29304	29864 ChEBI	mannitol	+	carbon source
29304	37684 ChEBI	mannose	+	carbon source
29304	28053 ChEBI	melibiose	+	carbon source
20181	17268 ChEBI	myo-inositol	-
29304	28044 ChEBI	phenylalanine	+	carbon source
29304	26271 ChEBI	proline	+	carbon source
20181	16634 ChEBI	raffinose	-
29304	16634 ChEBI	raffinose	+	carbon source
20181	26546 ChEBI	rhamnose	-
29304	33942 ChEBI	ribose	+	carbon source
29304	17814 ChEBI	salicin	+	carbon source
29304	17822 ChEBI	serine	+	carbon source
20181	17992 ChEBI	sucrose	-
29304	26986 ChEBI	threonine	+	carbon source
29304	27082 ChEBI	trehalose	+	carbon source
29304	53424 ChEBI	tween 20	+	carbon source
29304	53423 ChEBI	tween 40	+	carbon source
20181	18222 ChEBI	xylose	-
29304	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29304	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
29304	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20181	not determinedn.d.	-	+	+	+	+	+	+	-	+	-	+	-	-	-	+	+	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
15795	surface sterilized plant sample of Osyris wightiana Wall. ex Wight	Osyris wightiana	Yunnan province	China	CHN	Asia
67770	Surface-sterilized tissue of Osyris wightiana Wall. ex Wight	Osyris wightiana	Yunnan Province, south-west China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15795	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15795	Herbidospora cretacea strain YIM 65070 16S ribosomal RNA gene, partial sequence	FJ214356	1425		28444

GC content

@ref	GC-content (mol%)	Method
15795	70.4
67770	70.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Engineering mesophilic GH11 xylanase from Cellulomonas flavigena by rational design of N-terminus substitution.	Tian W, Zhang Z, Yang C, Li P, Xiao J, Wang R, Du P, Li N, Wang J.	Front Bioeng Biotechnol	10.3389/fbioe.2022.1044291	2022
Enzymology	Genome-based analysis of non-ribosomal peptide synthetase and type-I polyketide synthase gene clusters in all type strains of the genus Herbidospora.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N.	BMC Res Notes	10.1186/s13104-015-1526-9	2015
Phylogeny	Herbidospora gen. nov., a new genus of the family Streptosporangiaceae Goodfellow et al. 1990.	Kudo T, Itoh T, Miyadoh S, Shomura T, Seino A.	Int J Syst Bacteriol	10.1099/00207713-43-2-319	1993
Phylogeny	Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China.	Qin S, Li J, Chen HH, Zhao GZ, Zhu WY, Jiang CL, Xu LH, Li WJ.	Appl Environ Microbiol	10.1128/aem.01034-09	2009
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Herbidospora mongoliensis sp. nov., isolated from soil, and reclassification of Herbidospora osyris and Streptosporangium claviforme as synonyms of Herbidospora cretacea.	Ara I, Tsetseg B, Daram D, Suto M, Ando K.	Int J Syst Evol Microbiol	10.1099/ijs.0.037861-0	2012
Phylogeny	Herbidospora sakaeratensis sp. nov., isolated from soil, and reclassification of Streptosporangium claviforme as a later synonym of Herbidospora cretacea.	Boondaeng A, Suriyachadkun C, Ishida Y, Tamura T, Tokuyama S, Kitpreechavanich V.	Int J Syst Evol Microbiol	10.1099/ijs.0.024315-0	2011
Phylogeny	Herbidospora osyris sp. nov., isolated from surface-sterilized tissue of Osyris wightiana Wall. ex Wight.	Li J, Zhao GZ, Qin S, Zhu WY, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.010579-0	2009

References

#15795	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45214
#20181	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25718	IJSEM 3123 2009 ( DOI 10.1099/ijs.0.010579-0 , PubMed 19643877 )
#29304	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25718
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Herbidospora cretacea (DSM 45214, BCC 49353, CCTCC AA 208019)

Name and taxonomic classification

Morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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