Strain identifier
BacDive ID: 165811
Type strain: 
Species: Herbidospora cretacea
Strain history: T. Itoh I-385.
NCBI tax ID(s): 28444 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 165811
keywords: genome sequence, Bacteria, spore-forming, Gram-positive
description: Herbidospora cretacea JCM 8549 is a spore-forming, Gram-positive bacterium that was isolated from Bark of Japanese red pine .
NCBI tax id
- NCBI tax id: 28444
- Matching level: species
strain history
- @ref: 67770
- history: T. Itoh I-385.
doi: 10.13145/bacdive165811.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Herbidospora
- species: Herbidospora cretacea
- full scientific name: Herbidospora cretacea Kudo et al. 1993
synonyms
@ref synonym 20215 Herbidospora osyris 20215 Streptosporangium claviforme
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptosporangiales
family: Streptosporangiaceae
genus: Herbidospora
species: Herbidospora cretacea
full scientific name: Herbidospora cretacea Kudo et al. 1993
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 90.808
observation
- @ref: 67770
- observation: quinones: MK-10(III,IX-H4), MK-10(H2), MK-10(H6)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Bark of Japanese red pine (Pinus densiflora)
- host species: Pinus densiflora
- geographic location: Saitama Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
- @ref: 67770
- description: Herbidospora cretacea NRRL B-16917
- accession: GCA_000719065
- assembly level: contig
- database: ncbi
- NCBI tax ID: 28444
GC content
- @ref: 67770
- GC-content: 71
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.764 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.338 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.926 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.808 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 87 | no |
External links
@ref: 67770
culture collection no.: JCM 8549, NRRL B-16917
straininfo link
- @ref: 114634
- straininfo: 65484
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 114634 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID65484.1 |