Strain identifier

BacDive ID: 165811

Type strain: No

Species: Herbidospora cretacea

Strain history: T. Itoh I-385.

NCBI tax ID(s): 28444 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 165811

keywords: genome sequence, Bacteria, mesophilic

description: Herbidospora cretacea JCM 8549 is a mesophilic bacterium that was isolated from Bark of Japanese red pine .

NCBI tax id

  • NCBI tax id: 28444
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Itoh I-385.

doi: 10.13145/bacdive165811.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Herbidospora
  • species: Herbidospora cretacea
  • full scientific name: Herbidospora cretacea Kudo et al. 1993
  • synonyms

    @refsynonym
    20215Herbidospora osyris
    20215Streptosporangium claviforme

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Streptosporangiaceae

genus: Herbidospora

species: Herbidospora cretacea

full scientific name: Herbidospora cretacea Kudo et al. 1993

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-10(III,IX-H4), MK-10(H2), MK-10(H6)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Bark of Japanese red pine (Pinus densiflora)
  • host species: Pinus densiflora
  • geographic location: Saitama Pref.
  • country: Japan
  • origin.country: JPN
  • continent: Asia

Sequence information

Genome sequences

  • @ref: 67770
  • description: Herbidospora cretacea NRRL B-16917
  • accession: GCA_000719065
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 28444

GC content

  • @ref: 67770
  • GC-content: 71
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.735no
flagellatedno98.179no
gram-positiveyes90.558no
anaerobicno99.013no
halophileno94.462no
spore-formingyes95.302no
thermophileno98.007yes
glucose-utilyes89.068no
aerobicyes93.593no
glucose-fermentno93.724no

External links

@ref: 67770

culture collection no.: JCM 8549, NRRL B-16917

straininfo link

  • @ref: 114634
  • straininfo: 65484

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
114634Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID65484.1