Name: Microbispora hainanensis 211020
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16530

Type strain:

Species: Microbispora hainanensis

Strain Designation: 211020

Culture col. no.: DSM 45428, CGMCC 4.5595, JCM 19666

Strain history: CGMCC 4.5595 <-- X. X. Xu et al. 211020.

NCBI tax ID(s): 568844 (species)

SI-ID 401891

DSM 45428

Special Collections

Section

Microbispora hainanensis 211020 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from rhizosphere soil of Excoecaria agallocha.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Microbispora*
	Species	**Microbispora hainanensis**
	Full Scientific Name (LPSN)	Microbispora hainanensis Xu et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30491]	Gram stain	positive

[Ref.: #30491]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16789]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #16789]

Culture medium growth

[Ref.: #16789]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16789]

Culture medium composition

expand / minimize

[Ref.: #16789]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #16789]

Culture medium growth

[Ref.: #16789]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16789]

Culture medium composition

expand / minimize

[Ref.: #16789]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #16789]

Culture medium growth

[Ref.: #16789]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16789]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16789]	growth	28 °C
[Ref.: #30491]	growth	20-50 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30491]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30491]

Oxygen tolerance

aerobe

[Ref.: #30491]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30491]		NaCl		growth	0-1	%

[Ref.: #67770]

Observation

quinones: MK- 9(H₄), MK-9(H₂), MK-9(H₀)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30491]	cellobiose ChEBI	+	carbon source
[Ref.: #30491]	dextrin ChEBI	+	carbon source
[Ref.: #30491]	galactose ChEBI	+	carbon source
[Ref.: #30491]	glucose ChEBI	+	carbon source
[Ref.: #30491]	maltose ChEBI	+	carbon source
[Ref.: #30491]	mannitol ChEBI	+	carbon source
[Ref.: #30491]	mannose ChEBI	+	carbon source
[Ref.: #30491]	melibiose ChEBI	+	carbon source
[Ref.: #30491]	nitrate ChEBI	+	reduction
[Ref.: #30491]	rhamnose ChEBI	+	carbon source
[Ref.: #30491]	sorbitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16789]	Sample type/isolated from	rhizosphere soil of Excoecaria agallocha
[Ref.: #16789]	Host species	Excoecaria agallocha
[Ref.: #16789]	Geographic location (country and/or sea, region)	Hainan Province, Wenchang
[Ref.: #16789]	Country	China
[Ref.: #16789]	Country ISO 3 Code	CHN
[Ref.: #16789]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of Excoecaria agallocha in a mangrove
[Ref.: #67770]	Host species	Excoecaria agallocha
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16789]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16789]	Microbispora hainanensis strain 211020 16S ribosomal RNA gene, partial sequence	FJ261972	1480	GenBank ENA	568844 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbispora hainanensis DSM 45428	GCA_006874475	contig	GenBank ENA	568844 tax ID
[Ref.: #66792]	Microbispora hainanensis strain DSM 45428	568844.3	wgs	PATRIC	568844 tax ID	*

[Ref.: #16789]	GC-content	70.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30491]	GC-content	70.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbispora hainanensis strain DSM 45428 PATRIC: 568844.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbispora hainanensis strain DSM 45428 PATRIC: 568844.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.336	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.337	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	86.972	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.907	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.5	yes

Availability in culture collections External links

[Ref.: #16789]

Culture collection no.

DSM 45428, CGMCC 4.5595, JCM 19666

[Ref.: #85561]

SI-ID 401891

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A novel diterpene agent isolated from Microbispora hainanensis strain CSR-4 and its in vitro and in silico inhibition effects on acetylcholine esterase enzyme.	Thawai C, Bunbamrung N, Pittayakhajonwut P, Chongruchiroj S, Pratuangdejkul J, He YW, Tadtong S, Sareedenchai V, Prombutara P, Qian Y	Sci Rep	10.1038/s41598-020-68009-y	2020	*
Phylogeny	Microbispora tritici sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).	Han C, Zhao J, Yu B, Shi H, Zhang C, Guo X, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01246-y	2019	*
Phylogeny	Microbispora soli sp. nov., isolated from soil of a hot spring.	Kittisrisopit S, Pittayakhajonwut P, Tadtong S, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.003075	2018	*
Phylogeny	Microbispora triticiradicis sp. nov., a novel actinomycete isolated from the root of wheat (Triticum aestivum L.).	Han C, Tian Y, Zhao J, Yu Z, Jiang S, Guo X, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003040	2018	*
Phylogeny	Microbispora hainanensis sp. nov., isolated from rhizosphere soil of Excoecaria agallocha in a mangrove.	Xu XX, Wang HL, Lin HP, Wang C, Qu Z, Xie QY, Ruan JS, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.037267-0	2011	*

References

#16789

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45428

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30491

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26824 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85561

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401891.1 )

#26824

IJSEM 2430 2012 ( DOI 10.1099/ijs.0.037267-0 , PubMed 22140174 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Microbispora hainanensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Microbispora hainanensis strain DSM 45428

Microbispora hainanensis strain DSM 45428

Change proposal

Change proposal