Name: Microbispora corallina DF-32
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16529

Type strain:

Species: Microbispora corallina

Strain Designation: DF-32

Culture col. no.: DSM 44682, ATCC BAA-20, IFO 16416, JCM 10267, NBRC 161416, NBRC 16416, BCRC 16341, CGMCC 4.5569

Strain history: V. Kitpreechavanich DF-32.

NCBI tax ID(s): 83302 (species)

SI-ID 46268

ATCC BAA-20, JCM 10267, IFO 16416, DSM 44682, NBRC 16416, NBRC 161416, BCRC 16341, CCRC 16341

Special Collections

DSMZ
JCM

Other strains from Microbispora corallina

Section

Microbispora corallina DF-32 is a spore-forming bacterium that was isolated from soil from a deciduous diplerocarp.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Microbispora*
	Species	**Microbispora corallina**
	Full Scientific Name (LPSN)	Microbispora corallina Nakajima et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.273

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11997]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #11997]

Culture medium growth

[Ref.: #11997]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11997]

Culture medium composition

expand / minimize

[Ref.: #11997]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #11997]

Culture medium growth

[Ref.: #11997]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11997]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11997]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(III,VIII-H₄), MK-9(H₂), MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11997]	Sample type/isolated from	soil from a deciduous diplerocarp
[Ref.: #11997]	Country	Thailand
[Ref.: #11997]	Country ISO 3 Code	THA
[Ref.: #11997]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil at a deciduous dipterocarp forest
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB018046 (>99% sequence identity) for Microbispora corallina from Microbeatlas

Aquatic Samples	5
Soil Samples	55
Animal Samples	5
Plant Samples	28
Total Samples	93

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11997]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11997]	Microbispora corallina gene for 16S rRNA, partial sequence	AB018046	1442	GenBank ENA	83302 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbispora corallina NBRC 16416	GCA_016863035	contig	GenBank ENA	83302 tax ID	*
[Ref.: #66792]	Microbispora corallina strain NBRC 16416	83302.3	wgs	PATRIC	83302 tax ID	*

[Ref.: #11997]	GC-content	71 mol%
[Ref.: #67770]	GC-content	71.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbispora corallina strain NBRC 16416 PATRIC: 83302.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbispora corallina strain NBRC 16416 PATRIC: 83302.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.273	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.785	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.048	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	84.766	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86	no

Availability in culture collections External links

[Ref.: #11997]

Culture collection no.

DSM 44682, ATCC BAA-20, IFO 16416, JCM 10267, NBRC 161416, NBRC 16416, BCRC 16341, CGMCC 4.5569

[Ref.: #85560]

SI-ID 46268

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbispora tritici sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).	Han C, Zhao J, Yu B, Shi H, Zhang C, Guo X, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01246-y	2019	*
Phylogeny	Microbispora triticiradicis sp. nov., a novel actinomycete isolated from the root of wheat (Triticum aestivum L.).	Han C, Tian Y, Zhao J, Yu Z, Jiang S, Guo X, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003040	2018	*
Phylogeny	Microbispora hainanensis sp. nov., isolated from rhizosphere soil of Excoecaria agallocha in a mangrove.	Xu XX, Wang HL, Lin HP, Wang C, Qu Z, Xie QY, Ruan JS, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.037267-0	2011	*
Phylogeny	Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil.	Nakajima Y, Kitpreechavanich V, Suzuki K, Kudo T	Int J Syst Bacteriol	10.1099/00207713-49-4-1761	1999	*

References

#11997

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44682

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85560

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46268.1 )

* These data were automatically processed and therefore are not curated

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Microbispora corallina strain NBRC 16416

Microbispora corallina strain NBRC 16416

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