Micrococcus luteus JCM 3347 is a mesophilic prokaryote that was isolated from Nares.
mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Micrococcaceae |
| Genus Micrococcus |
| Species Micrococcus luteus |
| Full scientific name Micrococcus luteus (Schroeter 1872) Cohn 1872 (Approved Lists 1980) |
| Synonyms (3) |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 67770 | positive | growth | 30 | mesophilic |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | facultative anaerobe | 95 |
| 67770 | Sample typeNares |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM87779v1 assembly for Micrococcus luteus trpE16 | chromosome | 1270 | 78.15 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Micrococcus luteus genes for 16S rRNA, 16S-23S ISR, 23S rRNA, partial and complete sequence, strain:JCM3347. | AB088764 | 843 | 1270 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 95.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 85.10 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 57.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 93.65 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.85 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 84.94 | no |
| 125438 | aerobic | aerobicⓘ | yes | 87.24 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Novel Adamantane-Linked Isothiourea Derivatives as Potential Chemotherapeutic Agents: Synthesis, Structural Insights, and Antimicrobial/Anti-Proliferative Profiles. | Al-Omary FAM, Alvarez N, Al-Rasheed LS, Veiga N, Hassan HM, El-Emam AA. | ACS Omega | 10.1021/acsomega.3c01469 | 2023 | ||
| A combined crystallographic and theoretical investigation of noncovalent interactions in 1,3,4-oxadiazole-2-thione-N-Mannich derivatives: in vitro bioactivity and molecular docking. | Al-Wahaibi LH, Alagappan K, Gomila RM, Blacque O, Frontera A, Percino MJ, El-Emam AA, Thamotharan S. | RSC Adv | 10.1039/d3ra07169c | 2023 | ||
| Mediterranean Basin Erica Species: Traditional Uses, Phytochemistry and Pharmacological Properties. | Jabal KA, Pigott M, Sheridan H, Walsh JJ. | Molecules | 10.3390/molecules30122616 | 2025 | ||
| Synthesis and Structure Insights of Two Novel Broad-Spectrum Antibacterial Candidates Based on (E)-N'-[(Heteroaryl)methylene]adamantane-1-carbohydrazides. | Al-Wahaibi LH, Alvarez N, Blacque O, Veiga N, Al-Mutairi AA, El-Emam AA. | Molecules | 10.3390/molecules25081934 | 2020 | ||
| Distribution and diversity of olefins and olefin-biosynthesis genes in Gram-positive bacteria. | Surger M, Angelov A, Liebl W. | Biotechnol Biofuels | 10.1186/s13068-020-01706-y | 2020 | ||
| Identification of New Chromosomal Loci Involved in com Genes Expression and Natural Transformation in the Actinobacterial Model Organism Micrococcus luteus. | Torasso Kasem EJ, Angelov A, Werner E, Lichev A, Vanderhaeghen S, Liebl W. | Genes (Basel) | 10.3390/genes12091307 | 2021 | ||
| Pathogenicity | Synthesis, Antimicrobial, and Anti-Proliferative Activities of Novel 4-(Adamantan-1-yl)-1-arylidene-3-thiosemicarbazides, 4-Arylmethyl N'-(Adamantan-1-yl)piperidine-1-carbothioimidates, and Related Derivatives. | Al-Mutairi AA, Al-Alshaikh MA, Al-Omary FAM, Hassan HM, El-Mahdy AM, El-Emam AA. | Molecules | 10.3390/molecules24234308 | 2019 | |
| Metabolism | Amino acids as nutritional factors and (p)ppGpp as an alarmone of the stringent response regulate natural transformation in Micrococcus luteus. | Lichev A, Angelov A, Cucurull I, Liebl W. | Sci Rep | 10.1038/s41598-019-47423-x | 2019 | |
| 1,3,4-Oxadiazole N-Mannich Bases: Synthesis, Antimicrobial, and Anti-Proliferative Activities. | Al-Wahaibi LH, Mohamed AAB, Tawfik SS, Hassan HM, El-Emam AA. | Molecules | 10.3390/molecules26082110 | 2021 | ||
| Linear Plasmids in Micrococcus: Insights Into a Common Ancestor and Transfer by Conjugation. | Perez MF, Angelov A, Ubelacker M, Torres Tejerizo GA, Farias ME, Liebl W, Dib JR. | Environ Microbiol | 10.1111/1462-2920.70020 | 2025 | ||
| Novel Flp pilus biogenesis-dependent natural transformation. | Angelov A, Bergen P, Nadler F, Hornburg P, Lichev A, Ubelacker M, Pachl F, Kuster B, Liebl W. | Front Microbiol | 10.3389/fmicb.2015.00084 | 2015 | ||
| Adamantane-Isothiourea Hybrid Derivatives: Synthesis, Characterization, In Vitro Antimicrobial, and In Vivo Hypoglycemic Activities. | Al-Wahaibi LH, Hassan HM, Abo-Kamar AM, Ghabbour HA, El-Emam AA. | Molecules | 10.3390/molecules22050710 | 2017 | ||
| Impact of Branched-Chain Amino Acid Catabolism on Fatty Acid and Alkene Biosynthesis in Micrococcus luteus. | Surger MJ, Angelov A, Stier P, Ubelacker M, Liebl W. | Front Microbiol | 10.3389/fmicb.2018.00374 | 2018 | ||
| Metabolism | C29 olefinic hydrocarbons biosynthesized by Arthrobacter species. | Frias JA, Richman JE, Wackett LP. | Appl Environ Microbiol | 10.1128/aem.02547-08 | 2009 | |
| Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium. | Young M, Artsatbanov V, Beller HR, Chandra G, Chater KF, Dover LG, Goh EB, Kahan T, Kaprelyants AS, Kyrpides N, Lapidus A, Lowry SR, Lykidis A, Mahillon J, Markowitz V, Mavromatis K, Mukamolova GV, Oren A, Rokem JS, Smith MC, Young DI, Greenblatt CL. | J Bacteriol | 10.1128/jb.01254-09 | 2010 | ||
| Current development in genetic engineering strategies of Bacillus species. | Dong H, Zhang D. | Microb Cell Fact | 10.1186/1475-2859-13-63 | 2014 | ||
| dOCRL maintains immune cell quiescence by regulating endosomal traffic. | Del Signore SJ, Biber SA, Lehmann KS, Heimler SR, Rosenfeld BH, Eskin TL, Sweeney ST, Rodal AA. | PLoS Genet | 10.1371/journal.pgen.1007052 | 2017 | ||
| Organization and codon usage of the streptomycin operon in Micrococcus luteus, a bacterium with a high genomic G + C content. | Ohama T, Yamao F, Muto A, Osawa S. | J Bacteriol | 10.1128/jb.169.10.4770-4777.1987 | 1987 | ||
| PCR cloning of the resuscitation-promoting factor (Rpf) gene from Micrococcus luteus, sequencing and expression in Escherichia coli. | Matsuda M, Togo M, Kagawa S, Moore JE. | Microbios | 2001 | |||
| Metabolism | Toxicity of indoxyl derivative accumulation in bacteria and its use as a new counterselection principle. | Angelov A, Li H, Geissler A, Leis B, Liebl W | Syst Appl Microbiol | 10.1016/j.syapm.2013.06.001 | 2013 | |
| Phylogeny | Structural analysis and genetic variation of the 16S-23S rDNA internal spacer region from Micrococcus luteus strains. | Haga S, Hirano Y, Murayama O, Millar BC, Moore JE, Matsuda M | Lett Appl Microbiol | 10.1046/j.1472-765x.2003.01399.x | 2003 | |
| Metabolism | A genetic and biochemical study of histidine biosynthesis in Micrococcus luteus. | Kane-Falce C, Kloos WE | Genetics | 10.1093/genetics/79.3.361 | 1975 | |
| Genetics | Studies on the genomic heterogeneity of Micrococcus luteus strains by macro-restriction analysis using pulsed-field gel electrophoresis. | Murayama O, Matsuda M, Moore JE | J Basic Microbiol | 10.1002/jobm.200390036 | 2003 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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