Name: Micrococcus luteus JCM 3347
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164570

Type strain:

Species: Micrococcus luteus

Strain history: H. Hori <-- ATCC 27141 <-- W. E. Kloos strain ISU <-- E. A. Grula <-- C. Werkman <-- ... <-- A. Fleming.

NCBI tax ID(s): 1270 (species)

SI-ID 38830

ATCC 27141, JCM 3347

Special Collections

Other strains from Micrococcus luteus

Section

Micrococcus luteus JCM 3347 is a Gram-positive bacterium that was isolated from Nares.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Micrococcus*
	Species	**Micrococcus luteus**
	Full Scientific Name (LPSN)	Micrococcus luteus (Schroeter 1872) Cohn 1872 (Approved Lists 1980)

Synonym

"Bacteridium luteum"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %93.649

[Ref.: #69480]	Motility	no Confidence in %92.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Nares
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Micrococcus luteus genes for 16S rRNA, 16S-23S ISR, 23S rRNA, partial and complete sequence, strain:JCM3347.	AB088764	843	GenBank ENA	1270 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micrococcus luteus strain trpE16	1270.31	complete	PATRIC	1270 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micrococcus luteus strain trpE16 PATRIC: 1270.31
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	69	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micrococcus luteus strain trpE16 PATRIC: 1270.31
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	93.649	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.851	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.941	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.239	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 3347, ATCC 27141

[Ref.: #114178]

SI-ID 38830

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Toxicity of indoxyl derivative accumulation in bacteria and its use as a new counterselection principle.	Angelov A, Li H, Geissler A, Leis B, Liebl W	Syst Appl Microbiol	10.1016/j.syapm.2013.06.001	2013	*
Phylogeny	Structural analysis and genetic variation of the 16S-23S rDNA internal spacer region from Micrococcus luteus strains.	Haga S, Hirano Y, Murayama O, Millar BC, Moore JE, Matsuda M	Lett Appl Microbiol	10.1046/j.1472-765x.2003.01399.x	2003	*
Metabolism	A genetic and biochemical study of histidine biosynthesis in Micrococcus luteus.	Kane-Falce C, Kloos WE	Genetics	10.1093/genetics/79.3.361	1975	*
Genetics	Studies on the genomic heterogeneity of Micrococcus luteus strains by macro-restriction analysis using pulsed-field gel electrophoresis.	Murayama O, Matsuda M, Moore JE	J Basic Microbiol	10.1002/jobm.200390036	2003	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114178

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38830.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Micrococcus luteus strain trpE16

Micrococcus luteus strain trpE16

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