Name: Georgenia faecalis ZLJ0423
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164571

Type strain:

Species: Georgenia faecalis

Strain Designation: ZLJ0423

Culture col. no.: JCM 33470, CGMCC 1.13681

Strain history: J. Yang; China CDC, China; ZLJ0423.

NCBI tax ID(s): 2483799 (species)

Section

Georgenia faecalis ZLJ0423 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from Faeces of a Tibetan antelope from the Hoh Xil Nature Reserve.

coccus-shaped
colony-forming
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Bogoriellaceae*
	Genus	*Georgenia*
	Species	"Georgenia faecalis"
	Full Scientific Name (LPSN)	Georgenia faecalis Wang et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68361]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #68361]	Cell length	0.6-1 µm

[Ref.: #68361]	Cell shape	coccus-shaped

[Ref.: #68361]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.698

[Ref.: #68361]	Colony size	1 mm
[Ref.: #68361]	Colony color	pale yellow
[Ref.: #68361]	Colony shape	circular
[Ref.: #68361]	Incubation period	3 days
[Ref.: #68361]	Cultivation medium used	BHI agar

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #68361]	growth	4-40 °C
[Ref.: #68361]	optimum	28 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68361]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68361]			optimum	7.5
[Ref.: #68361]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68361]

Oxygen tolerance

aerobe

[Ref.: #68361]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68361]		NaCl		growth	0-5	%(w/v)
[Ref.: #68361]		NaCl		optimum	0.5	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68361]	amygdalin ChEBI	+	builds acid from
[Ref.: #68361]	arbutin ChEBI	+	builds acid from
[Ref.: #68361]	cellobiose ChEBI	+	builds acid from
[Ref.: #68361]	D-arabinose ChEBI	+/-	builds acid from
[Ref.: #68361]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68361]	D-fructose ChEBI	+	builds acid from
[Ref.: #68361]	D-fucose ChEBI	-	builds acid from
[Ref.: #68361]	D-galactose ChEBI	+	builds acid from
[Ref.: #68361]	D-glucose ChEBI	+	builds acid from
[Ref.: #68361]	D-lyxose ChEBI	+	builds acid from
[Ref.: #68361]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68361]	D-mannose ChEBI	+	builds acid from
[Ref.: #68361]	D-ribose ChEBI	+	builds acid from
[Ref.: #68361]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68361]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68361]	D-trehalose ChEBI	+	builds acid from
[Ref.: #68361]	D-xylose ChEBI	+	builds acid from
[Ref.: #68361]	erythritol ChEBI	-	builds acid from
[Ref.: #68361]	esculin ferric citrate	+	builds acid from
[Ref.: #68361]	galactitol ChEBI	-	builds acid from
[Ref.: #68361]	gentiobiose ChEBI	+	builds acid from
[Ref.: #68361]	glycerol ChEBI	-	builds acid from
[Ref.: #68361]	glycogen ChEBI	+	builds acid from
[Ref.: #68361]	inulin ChEBI	-	builds acid from
[Ref.: #68361]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68361]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68361]	L-fucose ChEBI	-	builds acid from
[Ref.: #68361]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #68361]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68361]	L-xylose ChEBI	-	builds acid from
[Ref.: #68361]	lactose ChEBI	+	builds acid from
[Ref.: #68361]	maltose ChEBI	+	builds acid from
[Ref.: #68361]	melezitose ChEBI	-	builds acid from
[Ref.: #68361]	melibiose ChEBI	-	builds acid from
[Ref.: #68361]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68361]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68361]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68361]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68361]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68361]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68361]	potassium 5-dehydro-D-gluconate	+/-	builds acid from
[Ref.: #68361]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #68361]	raffinose ChEBI	-	builds acid from
[Ref.: #68361]	ribitol ChEBI	-	builds acid from
[Ref.: #68361]	salicin ChEBI	+	builds acid from
[Ref.: #68361]	starch ChEBI	+	builds acid from
[Ref.: #68361]	sucrose ChEBI	+	builds acid from
[Ref.: #68361]	turanose ChEBI	+	builds acid from
[Ref.: #68361]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68361]	acid phosphatase	-	3.1.3.2
[Ref.: #68361]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68361]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68361]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #68361]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68361]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68361]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #68361]	beta-galactosidase	+	3.2.1.23
[Ref.: #68361]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #68361]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68361]	catalase	+	1.11.1.6
[Ref.: #68361]	cystine arylamidase	-	3.4.11.3
[Ref.: #68361]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68361]	esterase (C 4)	-
[Ref.: #68361]	esterase Lipase (C 8)	+/-
[Ref.: #68361]	leucine arylamidase	+	3.4.11.1
[Ref.: #68361]	lipase (C 14)	-
[Ref.: #68361]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68361]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #68361]	trypsin	-	3.4.21.4
[Ref.: #68361]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68361]

Fatty acid	Percentage
C15:0 anteiso	40.2
C15:1 anteiso A	20.9
C16:0	15.3
C14:0	6.1
C17:0 anteiso	4.1
C16:0 iso	3.8
C18:0	2.3
C17:0	2.1
C15:0 iso	1.9
C14:0 iso	1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Faeces of a Tibetan antelope from the Hoh Xil Nature Reserve
[Ref.: #67770]	Geographic location (country and/or sea, region)	Qinghai-Tibetan Plateau
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68361]	Sample type/isolated from	fecal sample of a Tibetan antelope
[Ref.: #68361]	Geographic location (country and/or sea, region)	Hoh Xil Nature Reserve, Qinghai-Tibetan Plateau
[Ref.: #68361]	Country	China
[Ref.: #68361]	Country ISO 3 Code	CHN
[Ref.: #68361]	Continent	Asia
[Ref.: #68361]	Geographic location	31.3653°/93.4439°
[Ref.: #68361]	Enrichment culture	BHI agar
[Ref.: #68361]	Enrichment culture duration	5 days
[Ref.: #68361]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Georgenia sp. strain ZLJ0423 16S ribosomal RNA gene, partial sequence	MH136554	1489	ENA	2483799 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Georgenia faecalis ZLJ0423	GCA_003710105	complete	GenBank	2483799 tax ID	*

[Ref.: #67770]

GC-content

73.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Georgenia faecalis ZLJ0423 NCBI: GCA_003710105.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Georgenia faecalis ZLJ0423 NCBI: GCA_003710105.1
[Ref.: #69480]	motile	no	91.925	yes
[Ref.: #69480]	flagellated	no	97.554	yes
[Ref.: #69480]	gram-positive	yes	94.252	yes
[Ref.: #69480]	anaerobic	no	98.865	yes
[Ref.: #69480]	aerobic	yes	87.017	yes
[Ref.: #69480]	halophile	no	81.265	no
[Ref.: #69480]	spore-forming	no	90.357	yes
[Ref.: #69480]	glucose-util	yes	88.899	no
[Ref.: #69480]	thermophile	no	99.307	yes
[Ref.: #69480]	glucose-ferment	no	71.952	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33470, CGMCC 1.13681

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Georgenia faecalis sp. nov. isolated from the faeces of Tibetan antelope.	Wang X, Yang J, Huang Y, Wu X, Wang L, Han L, Li S, Li H, Fu X, Chen H, Zhu X	J Microbiol	10.1007/s12275-020-0060-1	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68361

Xiaoxia Wang, Jing Yang, Yuyuan Huang, Xiaomin Wu, Licheng Wang, Limei Han, Sha Li, Huan Li, Xiaoying Fu, Hai Chen & Xiong Zhu: Georgenia faecalis sp. nov. isolated from the faeces of Tibetan antelope. J. Microbiol. 58: 734 - 740 2020 ( DOI 10.1007/s12275-020-0060-1 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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