Streptomyces yanii (DSM 43887, IFO 14669, IMET 9750)

Name: Streptomyces yanii (DSM 43887, IFO 14669, IMET 9750)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16405

Type strain

Strain Designation 80-133

Culture col. no. DSM 43887 IFO 14669 IMET 9750 JCM 3331 KCC A-0331 5 more

NCBI tax ID(s) 78510

Special Collections DSMZ JCM KCTC Wink compendium

History <- JCM (Microstreptospora cinerea) <- KCC <- AS 4.1146 <- X. Yan, 80-133 KCC A-0331 <-- AS 4.1146 <-- X. Yan 80-133.

Links

Streptomyces yanii 80-133 is a mesophilic prokaryote that was isolated from mud from a sewage ditch.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 50443

DSM 43887,IFO 14669,IMET 9750,JCM 3331,VKM Ac-1269,AS 4.1146,KCTC 9259,NBRC 14669,CGMCC 4.1146

@ref 20215

Last LPSN update 2025-12-16 09:50:50

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces yanii

Full scientific name Streptomyces yanii Liu et al. 2005

BacDive ID	Other strains from **Streptomyces yanii** (7)	Type strain
128351	S. yanii STH00390(ZIMET), HKI 0390
128352	S. yanii STH00391(ZIMET), HKI 0391
128353	S. yanii STI25025(IMET), H008,
128354	S. yanii STH00392(ZIMET), HKI 0392
128355	S. yanii STH00388(ZIMET), HKI 0388
128356	S. yanii STH00393(ZIMET), HKI 0393
160600	S. yanii MV14, DSM 41952

Morphology

Colony morphology

@ref	Colony color	Incubation period	Medium used
19975	Grey brown (8019)	10-14 days	ISP 2
19975	Umbra grey (7022)	10-14 days	ISP 3
19975	Umbra grey (7022)	10-14 days	ISP 4
19975	Cream (9001)	10-14 days	ISP 5
19975	Sand yellow (1002)	10-14 days	ISP 6
19975	Cream (9001)	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19975		ISP 2
19975		ISP 3
19975		ISP 4
19975		ISP 5
19975		ISP 6
19975		ISP 7

Multimedia

@ref:	11366
multimedia content:	DSM_43887.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43887.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11366	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
11366	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
19975	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19975	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19975	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19975	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19975	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19975	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11366	positive	growth	28	mesophilic
19975	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Compound production

11366

CompoundLL-DAP

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₄), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity
19975	22599 ChEBI	arabinose	+
19975	62968 ChEBI	cellulose	+
19975	28757 ChEBI	fructose	+
19975	17234 ChEBI	glucose	+
19975	29864 ChEBI	mannitol	+/-
19975	17268 ChEBI	myo-inositol	+
19975	16634 ChEBI	raffinose	+
19975	26546 ChEBI	rhamnose	-
19975	17992 ChEBI	sucrose	+/-
19975	18222 ChEBI	xylose	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	+	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19975	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11366	mud from a sewage ditch
67770	Mud from a sewage ditch	Zhanjiang City, Guangdong Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB006159 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	125
Soil Samples	1589
Animal Samples	280
Plant Samples	537
Total Samples	2531

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11366	1	Risk group (German classification) According to TRBA 466
19975	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953541v1 assembly for Streptomyces yanii JCM 3331	contig	GCA_039535415	78510	64.92
124043	ASM4243114v1 assembly for Streptomyces yanii JCM 3331	scaffold	GCA_042431145	78510	21.14

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces yanii gene for 16S rRNA, partial sequence	AB015854	1463	78510
20218	Streptomyces yanii gene for 16S ribosomal RNA, partial sequence	AB006159	1414	78510
124043	Streptomyces yanii strain JCM 3331 16S ribosomal RNA gene, partial sequence.	MT760450	1375	78510

GC content

@ref	GC-content (mol%)	Method
67770	72.4	thermal denaturation, midpoint method (Tm)
67770	69.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic and Functional Characterization of Culturable Endophytic Actinobacteria Associated With Camellia spp. for Growth Promotion in Commercial Tea Cultivars.	Borah A, Thakur D.	Front Microbiol	10.3389/fmicb.2020.00318	2020
	Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms.	Henao L, Zade RSH, Restrepo S, Husserl J, Abeel T.	BMC Genomics	10.1186/s12864-023-09190-y	2023
Phylogeny	Classification of Streptomyces griseus (Krainsky 1914) Waksman and Henrici 1948 and related species and the transfer of 'Microstreptospora cinerea' to the genus Streptomyces as Streptomyces yanii sp. nov.	Liu Z, Shi Y, Zhang Y, Zhou Z, Lu Z, Li W, Huang Y, Rodriguez C, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.63654-0	2005

References

#11366	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43887
#19975	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces yanii (DSM 43887, IFO 14669, IMET 9750)

Name and taxonomic classification

Morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Compound production

Observation

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039535415

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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