Streptomyces durmitorensis (DSM 41863, CIP 108995, JCM 16011)

Name: Streptomyces durmitorensis (DSM 41863, CIP 108995, JCM 16011)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16406

Type strain

Strain Designation MS 405

Culture col. no. DSM 41863 CIP 108995 JCM 16011 MS 405

NCBI tax ID(s) 319947

Special Collections DSMZ JCM CIP Wink compendium Literature strains

History <- M. Savic; MS 405 DSM 41863 <-- M. Savic MS405.

Links

Streptomyces durmitorensis MS 405 is a spore-forming, mesophilic, Gram-positive prokaryote that builds an aerial mycelium and was isolated from soil.

spore-forming Gram-positive mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297705

DSM 41863,CIP 108995,JCM 16011

@ref 20215

Last LPSN update 2026-02-09 11:21:57

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces durmitorensis

Full scientific name Streptomyces durmitorensis Savic et al. 2007

Morphology

Cell morphology

32070

Gram stainpositive

Colony morphology

@ref	Colony color	Incubation period	Medium used
19824	Cream	10-14 days	ISP 2
19824	Cream	10-14 days	ISP 3
19824	Grey white	10-14 days	ISP 4
19824	Cream	10-14 days	ISP 5
19824	Cream	10-14 days	ISP 6
19824	Cream	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
19824	Aerial Mycelium	Cream	ISP 2
19824	Aerial Mycelium	Cream	ISP 3
19824	Aerial Mycelium	Cream	ISP 4
19824	Aerial Mycelium	Golden yellow	ISP 5
19824			ISP 6
19824			ISP 7

Pigmentation

32070

Productionyes

Multimedia

@ref:	10643
multimedia content:	DSM_41863.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_41863.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10643	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19824	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19824	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19824	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19824	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19824	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19824	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
10643	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10643	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10643	positive	growth	28	mesophilic
32070	positive	growth	10-37
32070	positive	optimum	30	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

32070

Spore formationyes

Compound production

10643

Compoundimmunosuppressor

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32070	NaCl	positive	growth	0-9 %
32070	NaCl	positive	optimum	4.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19824	22599 ChEBI	arabinose	+
32070	17057 ChEBI	cellobiose	+	carbon source
19824	62968 ChEBI	cellulose	+
19824	28757 ChEBI	fructose	+
32070	28757 ChEBI	fructose	+	carbon source
32070	28260 ChEBI	galactose	+	carbon source
19824	17234 ChEBI	glucose	+
32070	17234 ChEBI	glucose	+	carbon source
32070	17754 ChEBI	glycerol	+	carbon source
19824	29864 ChEBI	mannitol	+
32070	29864 ChEBI	mannitol	+	carbon source
32070	37684 ChEBI	mannose	+	carbon source
32070	28053 ChEBI	melibiose	+	carbon source
19824	17268 ChEBI	myo-inositol	+
32070	17632 ChEBI	nitrate	+	reduction
19824	16634 ChEBI	raffinose	+
32070	16634 ChEBI	raffinose	+	carbon source
19824	26546 ChEBI	rhamnose	+
32070	26546 ChEBI	rhamnose	+	carbon source
19824	17992 ChEBI	sucrose	-
32070	17992 ChEBI	sucrose	+	carbon source
32070	27082 ChEBI	trehalose	+	carbon source
19824	18222 ChEBI	xylose	+
32070	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32070	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
32070	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	+	3.4.21.4	from API zym
32070	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19824	not determinedn.d.	+	+	+	-	+	+	-	+	+	+	+	+	+	-	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10643	soil	National Park Durmitor	Serbia and Montenegro	SRB	Europe
67770	Soil at the Durmitor National Park		Montenegro	MNE	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10643	1	Risk group (German classification) According to TRBA 466
19824	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953165v1 assembly for Streptomyces durmitorensis JCM 16011	scaffold	GCA_039531655	319947	46.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
10643	Streptomyces durmitorensis strain MS405 16S ribosomal RNA gene, partial sequence	DQ067287	1517		319947

GC content

10643

GC-content (mol%)72

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces durmitorensis sp. nov., a producer of an FK506-like immunosuppressant.	Savic M, Bratic I, Vasiljevic B	Int J Syst Evol Microbiol	10.1099/ijs.0.64913-0	2007

References

#10643	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41863
#19824	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28317	IJSEM 2119 2007 ( DOI 10.1099/ijs.0.64913-0 , PubMed 17766883 )
#32070	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28317
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces durmitorensis (DSM 41863, CIP 108995, JCM 16011)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Compound production

Halophily

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039531655

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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