Streptomyces rhizosphaericus (DSM 41760, NCIMB 13674, A10P1)

Name: Streptomyces rhizosphaericus (DSM 41760, NCIMB 13674, A10P1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16354

Type strain

Strain Designation A10P1

Culture col. no. DSM 41760 NCIMB 13674 A10P1 NBRC 100778 MTCC 6923 1 more

NCBI tax ID(s) 114699

Special Collections DSMZ JCM

Links

Streptomyces rhizosphaericus A10P1 is a mesophilic prokaryote that was isolated from ectorhizosphere of Paraserianthes falcataria.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 50106

MTCC 6923,DSM 41760,NCIMB 13674,JCM 11447,NBRC 100778

@ref 20215

Last LPSN update 2025-12-16 09:50:50

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces rhizosphaericus

Full scientific name Streptomyces rhizosphaericus corrig. Sembiring et al. 2001

Synonyms (1)

Streptomyces rhizosphaerius

BacDive ID	Other strains from **Streptomyces rhizosphaericus** (2)	Type strain
160525	S. rhizosphaericus A23R2, DSM 41762
160526	S. rhizosphaericus C9P3, DSM 41767

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.8
125439		92.8

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10553	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10553	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10553	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10553	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.102
125439	obligate aerobe	95.9

Spore formation

@ref	Spore formation	Confidence
125438		93.621
125439		92.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
10553	ectorhizosphere of Paraserianthes falcataria	Paraserianthes falcataria	Java, Yogyakarta	Indonesia	IDN	Asia
67770	Rhizosphere of the tropical legume, Paraserianthes falcataria	Paraserianthes falcataria	Yogyakarta	Indonesia	IDN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB249941 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1
Soil Samples	48
Animal Samples	7
Plant Samples	53
Total Samples	109

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10553	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1794218v1 assembly for Streptomyces rhizosphaericus DSM 41760	contig	GCA_017942185	114699.5	8048356638	114699	77.34
124043	ASM4267492v1 assembly for Streptomyces rhizosphaericus JCM 11447	contig	GCA_042674925			114699	67.48
124043	ASM3952594v1 assembly for Streptomyces rhizosphaericus JCM 11447	scaffold	GCA_039525945			114699	4.83

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces sp. A10P1 (S27) partial 16S rRNA gene	AJ391834	1480	114699
20218	Streptomyces rhizosphaericus strain DSM 41760 16S ribosomal RNA gene, partial sequence	FJ406121	1362	114699
20218	Streptomyces rhizosphaericus gene for 16S rRNA, partial sequence, strain: NBRC 100778	AB249941	1482	114699

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces rhizosphaericus DSM 41760
NCBI: GCA_017942185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.70	no
125439	motility	BacteriaNetⓘ	no	92.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces rhizosphaericus strain DSM 41760
PATRIC: 114699.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.43	no
125438	anaerobic	anaerobicⓘ	no	95.54	no
125438	spore-forming	spore-formingⓘ	yes	93.62	no
125438	aerobic	aerobicⓘ	yes	91.10	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics Reveals a Remarkable Biosynthetic Potential of the Streptomyces Phylogenetic Lineage Associated with Rugose-Ornamented Spores.	Chung YH, Kim H, Ji CH, Je HW, Lee D, Shim SH, Joo HS, Kang HS.	mSystems	10.1128/msystems.00489-21	2021
Phylogeny	Emended descriptions of Streptomyces javensis and Streptomyces rhizosphaericus based on reclassifications of Streptomyces yogyakartensis, Streptomyces cangkringensis, and Streptomyces indonesiensis.	Komaki H.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006881	2025
Phylogeny	Streptomyces solisilvae sp. nov., isolated from tropical forest soil.	Zhou S, Yang X, Huang D, Huang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002166	2017

References

#10553	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41760
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces rhizosphaericus (DSM 41760, NCIMB 13674, A10P1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017942185

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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